Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13704 | Sorghum | cytosol | 76.9 | 86.94 |
| Os06t0358800-01 | Rice | cytosol | 62.92 | 69.23 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 60.49 | 64.4 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 60.18 | 64.08 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 60.49 | 63.58 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 59.88 | 63.14 |
| HORVU7Hr1G082860.4 | Barley | plastid | 59.88 | 54.87 |
| VIT_12s0059g01120.t01 | Wine grape | cytosol | 36.78 | 42.16 |
| Solyc05g041920.2.1 | Tomato | cytosol | 33.43 | 41.35 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 34.95 | 40.49 |
| Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 34.95 | 40.49 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 34.95 | 40.49 |
| CDY22924 | Canola | cytosol | 34.65 | 40.28 |
| Bra039552.1-P | Field mustard | cytosol | 34.65 | 40.28 |
| PGSC0003DMT400086351 | Potato | cytosol | 24.62 | 39.9 |
| CDY48286 | Canola | cytosol | 34.04 | 39.58 |
| PGSC0003DMT400053499 | Potato | mitochondrion | 34.95 | 39.52 |
| AT4G15417.2 | Thale cress | mitochondrion | 33.43 | 38.06 |
| PGSC0003DMT400001808 | Potato | cytosol | 27.05 | 35.46 |
| PGSC0003DMT400001805 | Potato | mitochondrion | 31.31 | 35.15 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 31.0 | 34.81 |
| Solyc07g049150.2.1 | Tomato | cytosol | 26.44 | 32.46 |
| Solyc05g024210.1.1 | Tomato | cytosol | 30.7 | 30.06 |
| Zm00001d009879_P002 | Maize | plastid | 32.22 | 28.19 |
| Zm00001d013797_P006 | Maize | nucleus | 25.53 | 11.43 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 25.53 | 5.73 |
| Zm00001d042432_P007 | Maize | cytosol | 28.88 | 5.7 |
| Zm00001d027412_P004 | Maize | cytosol, nucleus, plastid | 31.91 | 5.44 |
| Zm00001d032655_P006 | Maize | nucleus | 25.23 | 5.29 |
| Zm00001d025830_P011 | Maize | cytosol, nucleus, plasma membrane | 24.62 | 5.03 |
| GSMUA_Achr10P... | Banana | extracellular | 2.13 | 3.74 |
| GSMUA_Achr9P22470_001 | Banana | cytosol | 1.52 | 1.31 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:100273842 | Gene3D:3.30.160.20 | MapMan:35.1 | UniProt:B4FXR5 | EMBL:BT041903 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0090501 | GO:GO:0090502 | InterPro:IPR000999 | InterPro:IPR014720 | InterPro:IPR036389 |
| ProteinID:ONM04930.1 | PFAM:PF00035 | PFAM:PF00636 | ScanProsite:PS00517 | PFscan:PS50137 | PFscan:PS50142 |
| PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00535 |
| SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI00017B7FDE | EnsemblPlantsGene:Zm00001d032362 | EnsemblPlants:Zm00001d032362_P002 | EnsemblPlants:Zm00001d032362_T002 |
| InterPro:dsRBD_dom | : | : | : | : | : |
Description
RNAse II-like 1
Coordinates
chr1:+:224023617..224026653
Molecular Weight (calculated)
36928.0 Da
IEP (calculated)
6.095
GRAVY (calculated)
-0.385
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIDHIVRAA LRHRGNRKQS SAMPPYAPRE QRHDGPPGEV PPMSAKDVTA IEALLGYCFI DKSLVELALT HGSFYWPNRP GDTYERLEYL GDGVLTCLMS
101: REVFRTYRTL QPGPLTRLRA ANVDTEKLAR VAVHRGLHRF LRHKAPKLQD QICFFIEEMR KYPVHSNGLL DPPKVLCDIV ESLIGAIYLD SNFDQEEVWR
201: VFRTLADPLI GLETLGKHPV SELFEFCQKT HRGVKFLKDE WDKSLKVQVL IDGEVVGSAI YGPKKEIAQN RAAKDALDKL KDTHGHTQSE SASVDVSEAL
301: DELDNTQSES ASVDVSEALD ELDIAGTLN
101: REVFRTYRTL QPGPLTRLRA ANVDTEKLAR VAVHRGLHRF LRHKAPKLQD QICFFIEEMR KYPVHSNGLL DPPKVLCDIV ESLIGAIYLD SNFDQEEVWR
201: VFRTLADPLI GLETLGKHPV SELFEFCQKT HRGVKFLKDE WDKSLKVQVL IDGEVVGSAI YGPKKEIAQN RAAKDALDKL KDTHGHTQSE SASVDVSEAL
301: DELDNTQSES ASVDVSEALD ELDIAGTLN
001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
Arabidopsis Description
ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.