Factsheet for VIT_12s0059g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086351	Potato	cytosol	34.84	49.26
Solyc05g041920.2.1	Tomato	cytosol	43.55	46.99
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	44.95	45.42
CDX90592	Canola	cytosol, nucleus, peroxisome	44.95	45.42
CDY22924	Canola	cytosol	44.6	45.23
Bra039552.1-P	Field mustard	cytosol	44.6	45.23
CDY09765	Canola	cytosol, nucleus, peroxisome	44.6	45.07
AT4G15417.2	Thale cress	mitochondrion	44.95	44.64
CDY48286	Canola	cytosol	43.55	44.17
PGSC0003DMT400053499	Potato	mitochondrion	43.55	42.96
Solyc07g049160.2.1	Tomato	mitochondrion	43.55	42.66
PGSC0003DMT400001805	Potato	mitochondrion	43.55	42.66
PGSC0003DMT400001808	Potato	cytosol	36.93	42.23
Os06t0358800-01	Rice	cytosol	43.21	41.47
EES13704	Sorghum	cytosol	41.81	41.24
Solyc07g049150.2.1	Tomato	cytosol	36.59	39.18
TraesCS7D01G344100.1	Wheat	cytosol	42.16	39.16
TraesCS7B01G248100.1	Wheat	cytosol	41.46	38.51
TraesCS7A01G336500.1	Wheat	cytosol	41.81	38.46
TraesCS7D01G344200.1	Wheat	cytosol	40.42	37.06
Zm00001d032362_P002	Maize	mitochondrion	42.16	36.78
Solyc05g024210.1.1	Tomato	cytosol	42.16	36.01
HORVU7Hr1G082860.4	Barley	plastid	40.77	32.59
TraesCS2D01G479300.1	Wheat	plastid	35.54	29.48
VIT_19s0090g00940.t01	Wine grape	cytosol	33.45	28.49
VIT_04s0023g00920.t01	Wine grape	cytosol, nucleus, plastid	30.66	6.31
VIT_11s0149g00120.t01	Wine grape	cytosol	24.39	5.65
VIT_15s0048g02380.t01	Wine grape	cytosol, nucleus, plastid	33.8	4.98
GSMUA_Achr10P...	Banana	extracellular	3.14	4.81
VIT_04s0008g02170.t01	Wine grape	mitochondrion	32.4	4.79
GSMUA_Achr9P22470_001	Banana	cytosol	2.79	2.09
VIT_04s0008g02150.t01	Wine grape	cytosol	2.09	1.73
VIT_11s0149g00100.t01	Wine grape	cytosol	1.05	1.49

Protein Annotations

Gene3D:1.10.1520.10	EntrezGene:100260185	wikigene:100260185	MapMan:35.1	EMBL:AM426691	ProteinID:CAN62473
ProteinID:CAN62473.1	ProteinID:CBI28843	ProteinID:CBI28843.3	UniProt:D7TEC0	EMBL:FN595765	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016442	GO:GO:0016787
GO:GO:0030422	GO:GO:0040029	GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR036389
EntrezGene:LOC100260185	wikigene:LOC100260185	PFAM:PF00636	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35
InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI00015CACE1
ArrayExpress:VIT_12s0059g01120	EnsemblPlantsGene:VIT_12s0059g01120	EnsemblPlants:VIT_12s0059g01120.t01	RefSeq:XP_002270948	RefSeq:XP_002270948.2	SEG:seg

Description

No Description!

Coordinates

chr12:-:6043798..6045557

Molecular Weight (calculated)

33232.0 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.501

Length

287 amino acids

Sequence
(BLAST)

001: MEPHPQKPRG EGETESCADS YESAESFPSL EGVEQILGYS FTNKRLLEEA YTHASCQKNQ FSYERLEFMG DSVLSLLITK EQFFLYPDLQ PGRLTRLRSA
101: NVDKEKLARV ALKHGLHRFL RHKKPKIEQQ IYEFAEAIKE YPLHSNGQIE VPKVLADVVE STIGAVFVDC NCSVDTVWKV FKGLLEPMIV PETLKVHPVT
201: ELNERCQKRG LKLEFKDSWQ RRGDIDFYIE DYFAGRGEYP LRKDIALNRA AKAALNNIDR ILKNVENPTL MMKLRSRWRK VLKFVYG

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.