Factsheet for TraesCS2D01G479300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G344100.1	Wheat	cytosol	36.42	40.78
TraesCS7D01G344200.1	Wheat	cytosol	36.13	39.94
VIT_12s0059g01120.t01	Wine grape	cytosol	29.48	35.54
CDY22924	Canola	cytosol	27.46	33.57
CDY48286	Canola	cytosol	27.17	33.22
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	27.17	33.1
CDX90592	Canola	cytosol, nucleus, peroxisome	27.17	33.1
Bra039552.1-P	Field mustard	cytosol	26.88	32.86
CDY09765	Canola	cytosol, nucleus, peroxisome	26.88	32.75
PGSC0003DMT400086351	Potato	cytosol	19.08	32.51
Solyc05g041920.2.1	Tomato	cytosol	24.86	32.33
PGSC0003DMT400001808	Potato	cytosol	23.12	31.87
AT4G15417.2	Thale cress	mitochondrion	25.43	30.45
Solyc07g049150.2.1	Tomato	cytosol	23.12	29.85
Solyc07g049160.2.1	Tomato	mitochondrion	25.14	29.69
PGSC0003DMT400053499	Potato	mitochondrion	24.57	29.21
PGSC0003DMT400001805	Potato	mitochondrion	24.57	29.01
Solyc05g024210.1.1	Tomato	cytosol	24.86	25.6
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	26.3	24.46
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	26.01	24.46
TraesCS7D01G504300.3	Wheat	mitochondrion	25.72	24.05
TraesCS5D01G086900.1	Wheat	cytosol	27.17	6.71
TraesCS2D01G362700.1	Wheat	nucleus	29.48	6.28
TraesCS3D01G411200.6	Wheat	nucleus	29.48	6.24
GSMUA_Achr10P...	Banana	extracellular	3.18	5.88
TraesCS1D01G158000.2	Wheat	nucleus	26.59	5.65
TraesCS4D01G342300.1	Wheat	mitochondrion	29.19	4.99
GSMUA_Achr9P22470_001	Banana	cytosol	2.02	1.83

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:IPR000999	InterPro:IPR036389	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50142
PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768
SUPFAM:SSF69065	EnsemblPlantsGene:TraesCS2D01G479300	EnsemblPlants:TraesCS2D01G479300.1	TIGR:cd00593	SEG:seg	:

Description

No Description!

Coordinates

chr2D:+:580188258..580189298

Molecular Weight (calculated)

37962.8 Da

IEP (calculated)

10.953

GRAVY (calculated)

-0.405

Length

346 amino acids

Sequence
(BLAST)

001: MSGPAPAGTP ERWLVRRRKR RRYRALSSTL STSRPTDTQA PRPAWRRKRR CRLVRRRRRG AKPPDAIAAV EAILGYTFAD KALVEAALTH GSFHAGSRAG
101: GAGATYERLE FLGDRAINVV VASHLYSAHP ALRPGALTRL HSLNVDREKL ARAAVAHGLH RFLRHETPFL GQHADDFAAE IAAYPVHSNG QVRAPKCLSD
201: MVEALIGAVF LDSGDDNEQV WRVFRRLADP LIGPEMVGKQ PMMEFNELCQ GKMLQARIVK KDWAKSHTVK VVVAGETVAV ATYGKNKHAA RNRAVKSALD
301: IIKARKKDSM VTLTSAPHDK DGMSVGGDHC PPKTPDLLSA MSNGCN

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.