Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G160900.1 | Wheat | nucleus | 97.91 | 97.97 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 61.92 | 97.3 |
| HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 95.88 | 92.75 |
| OQU91611 | Sorghum | nucleus, plastid | 81.02 | 80.57 |
| Os10t0485600-01 | Rice | cytosol, plastid | 80.53 | 80.09 |
| Zm00001d032655_P006 | Maize | nucleus | 75.55 | 78.34 |
| GSMUA_Achr5P10880_001 | Banana | cytosol | 51.97 | 52.94 |
| Solyc08g067210.2.1 | Tomato | nucleus | 40.91 | 46.57 |
| KRH61605 | Soybean | nucleus | 46.25 | 44.98 |
| TraesCS3D01G411200.6 | Wheat | nucleus | 43.8 | 43.64 |
| KRH52276 | Soybean | cytosol | 12.84 | 41.55 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 38.94 | 40.13 |
| CDY30942 | Canola | nucleus | 30.9 | 39.89 |
| Bra019456.1-P | Field mustard | nucleus | 34.34 | 38.63 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 44.96 | 37.67 |
| CDY21223 | Canola | nucleus | 35.32 | 37.56 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 6.39 | 33.66 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 6.2 | 32.27 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 25.74 | 29.91 |
| TraesCS2D01G362700.1 | Wheat | nucleus | 28.07 | 28.12 |
| TraesCS7D01G502800.1 | Wheat | mitochondrion, nucleus | 6.33 | 27.99 |
| TraesCS7D01G504300.3 | Wheat | mitochondrion | 6.27 | 27.57 |
| TraesCS7D01G398600.2 | Wheat | mitochondrion, nucleus | 6.2 | 27.15 |
| TraesCS2D01G479300.1 | Wheat | plastid | 5.65 | 26.59 |
| TraesCS4D01G342300.1 | Wheat | mitochondrion | 31.57 | 25.4 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:1.20.1320.30 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 |
| Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0016891 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000999 | InterPro:IPR001650 |
| InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:IPR036389 | InterPro:IPR038248 |
| InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00035 | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 | PFscan:PS50142 | PFscan:PS50821 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF31 | InterPro:RNase_III_dom |
| InterPro:RNase_III_sf | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 |
| SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS1D01G158000 | EnsemblPlants:TraesCS1D01G158000.2 | TIGR:cd00046 |
| TIGR:cd00079 | TIGR:cd00593 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:+:222904040..222916131
Molecular Weight (calculated)
184044.0 Da
IEP (calculated)
6.916
GRAVY (calculated)
-0.158
Length
1628 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAMAMADDDG PIPPPPPPPP PRRPHRQLQP RRYQVEVFEA ALQGNTIAVL DTGSGKTMVA VLLARHHVGR VRAGEVPRRI VVFLAPTVHL VHQQFEVIRE
0101: YTDLDAAECY GASGVGDWST DRWNKEVGSK EIAVMTPQIL LDALRHAFVT MSAVSLLIFD ECHRACGNHP YTRIMKEFYL GSQWRPAVFG MTASPVATKG
0201: TCTVQDCEAH IGQLELTLDA KVYIIKDRSE LESFSPPATI VNKYYDAYSI DFEDLKSKLQ ILYEEYDALL ASLQESSPNK FEDTNNILET SRKTLFRYHE
0301: KIFYGLNYLG PIITAEVVKI YNESIKTLGD SEDCLFSKAS FSLHVAYFKE ALDLVEEVLP HGYGELMKSE SGSAELIKSG YISSKVDALI NIFKSFGSSN
0401: EVLCLIFVER IMTAKAVERF MRGIVNFSSF SISYLTGGST SKDSLSPAVQ RYTLDLFRSG KVNLLFTTDV TEEGIDVPNC SCVIRFDLPR TVCSYVQSRG
0501: RARRSSSNYV LMIERGNMDQ QEHIFRIIQT EYYIKHFALY RHRNPNVSSS EWPMQDKYAY HVDSTGATIT ADCCVDLIRK YCEKLPKDRY YIPKPSFAVA
0601: IEDGSYQCTL TLPPNAAFQR IVGPLCSTSN LAKQLVSLDA CKKLHQLGEL NDHLLPFTEE PIDIDVALRD GKFLSGPGTT KRKELHGTRN VLALSGSWIH
0701: ESESVTLNAY RFDFLCDQEG ENYAGFVLLM ESALDDDVAC SKMDLFLIPN KMVYTTVTPC GKVQLDKKQL RDGKLFQEFF FNGIFGRLFH GSRTSGVQRE
0801: FLFRKGHEIQ WSSQSMYLLL PLRHSPHIQQ DLNIYWEAVE SCTQAVEQLR NLYLEDENIR ANFIQHRSIK EKDIIHLANK SLHFSSIKDS VVLSLHTGRI
0901: YSVLDLIYGT TAEDSFEEMY NGKASPFSSF VDYYREKYGI VIQHPKQPLL LLKQSHNAHN LLFSKSKYID GSTGDPLLME KEQIHARVPP ELLIHIDVTI
1001: EVLKSFYLLP SVMHRLQSLM LASQLRRDIG YTQHIPSYLI LEAITTLRCC ETFSLERLEL LGDSVLKYVI GCDLFLRYPM KHEGHLSDMR SNAVCNATLH
1101: KHGIWRSLQG YVRDSAFDPR RWVAPGQISL RPFPCNCRIE TAFVPSNGRY ISDDPSFVVG KPCDRAHRWM CSKAISDCVE ALVGAYYVGG GIVGALWVMK
1201: WFGIEIKCDR KLVQEVKLNA SYICYLPKIS VIEELEAKLK YNFSVKGLLL EAITHPSLQE LGADYCYQRL EFLGDSVLDL LITRYLYVTH TDVDPGELTD
1301: LRSALVSNEN FAEVVLRNNI HSHLQHGSGI LLEQITEYVR SNLECQGKVN KFLQHATCKV PKVLGDIMES IAGAIFVDTD FNVDVVWKIV EPLLSPMITP
1401: DNLVLPPYRE LLELCSHLGY FINSKCSSKG EEVIIEMSVQ LRDELLIAQG QDRNKKSAKS KAAARILADL KKRGLSMKQC SSKAKQLDII SSDQQYPLAS
1501: LESPLDYCHV DANPSLGGLP SLKEAVVLRL KLDKGGPRSA LFKLCKRLQW PMPEFEFVEQ RFRTPIVLDG VTTTNFNSFV STITLHIPDV TAITLQGERR
1601: TDKKSSQDSA SLIMLHKLQE LKVCICKT
0101: YTDLDAAECY GASGVGDWST DRWNKEVGSK EIAVMTPQIL LDALRHAFVT MSAVSLLIFD ECHRACGNHP YTRIMKEFYL GSQWRPAVFG MTASPVATKG
0201: TCTVQDCEAH IGQLELTLDA KVYIIKDRSE LESFSPPATI VNKYYDAYSI DFEDLKSKLQ ILYEEYDALL ASLQESSPNK FEDTNNILET SRKTLFRYHE
0301: KIFYGLNYLG PIITAEVVKI YNESIKTLGD SEDCLFSKAS FSLHVAYFKE ALDLVEEVLP HGYGELMKSE SGSAELIKSG YISSKVDALI NIFKSFGSSN
0401: EVLCLIFVER IMTAKAVERF MRGIVNFSSF SISYLTGGST SKDSLSPAVQ RYTLDLFRSG KVNLLFTTDV TEEGIDVPNC SCVIRFDLPR TVCSYVQSRG
0501: RARRSSSNYV LMIERGNMDQ QEHIFRIIQT EYYIKHFALY RHRNPNVSSS EWPMQDKYAY HVDSTGATIT ADCCVDLIRK YCEKLPKDRY YIPKPSFAVA
0601: IEDGSYQCTL TLPPNAAFQR IVGPLCSTSN LAKQLVSLDA CKKLHQLGEL NDHLLPFTEE PIDIDVALRD GKFLSGPGTT KRKELHGTRN VLALSGSWIH
0701: ESESVTLNAY RFDFLCDQEG ENYAGFVLLM ESALDDDVAC SKMDLFLIPN KMVYTTVTPC GKVQLDKKQL RDGKLFQEFF FNGIFGRLFH GSRTSGVQRE
0801: FLFRKGHEIQ WSSQSMYLLL PLRHSPHIQQ DLNIYWEAVE SCTQAVEQLR NLYLEDENIR ANFIQHRSIK EKDIIHLANK SLHFSSIKDS VVLSLHTGRI
0901: YSVLDLIYGT TAEDSFEEMY NGKASPFSSF VDYYREKYGI VIQHPKQPLL LLKQSHNAHN LLFSKSKYID GSTGDPLLME KEQIHARVPP ELLIHIDVTI
1001: EVLKSFYLLP SVMHRLQSLM LASQLRRDIG YTQHIPSYLI LEAITTLRCC ETFSLERLEL LGDSVLKYVI GCDLFLRYPM KHEGHLSDMR SNAVCNATLH
1101: KHGIWRSLQG YVRDSAFDPR RWVAPGQISL RPFPCNCRIE TAFVPSNGRY ISDDPSFVVG KPCDRAHRWM CSKAISDCVE ALVGAYYVGG GIVGALWVMK
1201: WFGIEIKCDR KLVQEVKLNA SYICYLPKIS VIEELEAKLK YNFSVKGLLL EAITHPSLQE LGADYCYQRL EFLGDSVLDL LITRYLYVTH TDVDPGELTD
1301: LRSALVSNEN FAEVVLRNNI HSHLQHGSGI LLEQITEYVR SNLECQGKVN KFLQHATCKV PKVLGDIMES IAGAIFVDTD FNVDVVWKIV EPLLSPMITP
1401: DNLVLPPYRE LLELCSHLGY FINSKCSSKG EEVIIEMSVQ LRDELLIAQG QDRNKKSAKS KAAARILADL KKRGLSMKQC SSKAKQLDII SSDQQYPLAS
1501: LESPLDYCHV DANPSLGGLP SLKEAVVLRL KLDKGGPRSA LFKLCKRLQW PMPEFEFVEQ RFRTPIVLDG VTTTNFNSFV STITLHIPDV TAITLQGERR
1601: TDKKSSQDSA SLIMLHKLQE LKVCICKT
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV
0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC
0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP
0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP
0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL
0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ
0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS
0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA
0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE
1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI
1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL
1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV
1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD
1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG
1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K
0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV
0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC
0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP
0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP
0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL
0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ
0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS
0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA
0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE
1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI
1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL
1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV
1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD
1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG
1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.