Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7D01G344100.1 | Wheat | cytosol | 92.33 | 93.53 |
HORVU7Hr1G082860.4 | Barley | plastid | 88.82 | 77.44 |
EES13704 | Sorghum | cytosol | 65.18 | 70.1 |
Os06t0358800-01 | Rice | cytosol | 64.54 | 67.56 |
Zm00001d032362_P002 | Maize | mitochondrion | 63.58 | 60.49 |
Bra039552.1-P | Field mustard | cytosol | 36.74 | 40.64 |
CDY22924 | Canola | cytosol | 36.74 | 40.64 |
Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 36.74 | 40.49 |
CDY09765 | Canola | cytosol, nucleus, peroxisome | 36.74 | 40.49 |
CDX90592 | Canola | cytosol, nucleus, peroxisome | 36.74 | 40.49 |
VIT_12s0059g01120.t01 | Wine grape | cytosol | 37.06 | 40.42 |
CDY48286 | Canola | cytosol | 36.1 | 39.93 |
Solyc05g041920.2.1 | Tomato | cytosol | 33.87 | 39.85 |
PGSC0003DMT400086351 | Potato | cytosol | 25.24 | 38.92 |
PGSC0003DMT400053499 | Potato | mitochondrion | 34.19 | 36.77 |
AT4G15417.2 | Thale cress | mitochondrion | 33.87 | 36.68 |
PGSC0003DMT400001808 | Potato | cytosol | 29.07 | 36.26 |
TraesCS2D01G479300.1 | Wheat | plastid | 39.94 | 36.13 |
PGSC0003DMT400001805 | Potato | mitochondrion | 33.23 | 35.49 |
Solyc07g049160.2.1 | Tomato | mitochondrion | 32.91 | 35.15 |
Solyc07g049150.2.1 | Tomato | cytosol | 28.43 | 33.21 |
Solyc05g024210.1.1 | Tomato | cytosol | 32.91 | 30.65 |
TraesCS7D01G502800.1 | Wheat | mitochondrion, nucleus | 32.27 | 27.45 |
TraesCS7D01G398600.2 | Wheat | mitochondrion, nucleus | 32.59 | 27.42 |
TraesCS7D01G504300.3 | Wheat | mitochondrion | 31.95 | 27.03 |
TraesCS5D01G086900.1 | Wheat | cytosol | 31.31 | 7.0 |
TraesCS3D01G411200.6 | Wheat | nucleus | 32.59 | 6.24 |
TraesCS1D01G158000.2 | Wheat | nucleus | 32.27 | 6.2 |
TraesCS2D01G362700.1 | Wheat | nucleus | 29.39 | 5.66 |
GSMUA_Achr10P... | Banana | extracellular | 3.19 | 5.35 |
TraesCS4D01G342300.1 | Wheat | mitochondrion | 33.87 | 5.24 |
GSMUA_Achr9P22470_001 | Banana | cytosol | 2.24 | 1.83 |
Protein Annotations
Gene3D:1.10.1520.10 | Gene3D:3.30.160.20 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 |
GO:GO:0004525 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0016787 | InterPro:IPR000999 | InterPro:IPR036389 | PFAM:PF00636 | ScanProsite:PS00517 | PFscan:PS50142 |
PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00535 | SUPFAM:SSF54768 |
SUPFAM:SSF69065 | EnsemblPlantsGene:TraesCS7D01G344200 | EnsemblPlants:TraesCS7D01G344200.1 | TIGR:cd00593 | SEG:seg | : |
Description
No Description!
Coordinates
chr7D:+:440975803..440978068
Molecular Weight (calculated)
34633.1 Da
IEP (calculated)
4.941
GRAVY (calculated)
-0.362
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPQSHSHSQ SHSPPPAADD DPDAMPREQQ QREEAPPGYV PPMSPEEVAA VEALLCYEFK DKSLVGLALT HGSFYLPYRS GDATYERLEY LGDAVLTCLV
101: SREVFLTYRD LPPGPLTRLR AANVDKEKLA RIAVDHGIHR FLRHKAPKLE EQIADFVKEL CQYEYHSNGL LDAPKVLSDI VESLIGAIYL DSKYNQELVW
201: QVFRKLANPL ISLESLGKHP VSELLEFGQK TGRIVDISKD GWVKDTKVDV FVDGVLVASA TYAQKKEIAS NRAAKAALDK LKEMSGQSDV LSAPGEAPEP
301: LDELGRAGAL ELQ
101: SREVFLTYRD LPPGPLTRLR AANVDKEKLA RIAVDHGIHR FLRHKAPKLE EQIADFVKEL CQYEYHSNGL LDAPKVLSDI VESLIGAIYL DSKYNQELVW
201: QVFRKLANPL ISLESLGKHP VSELLEFGQK TGRIVDISKD GWVKDTKVDV FVDGVLVASA TYAQKKEIAS NRAAKAALDK LKEMSGQSDV LSAPGEAPEP
301: LDELGRAGAL ELQ
001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
Arabidopsis Description
ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.