Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400086351 | Potato | cytosol | 50.3 | 83.25 |
| Solyc05g041920.2.1 | Tomato | cytosol | 43.15 | 54.51 |
| Solyc07g049150.2.1 | Tomato | cytosol | 39.88 | 50.0 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 39.88 | 45.73 |
| Bra039552.1-P | Field mustard | cytosol | 35.71 | 42.4 |
| VIT_12s0059g01120.t01 | Wine grape | cytosol | 36.01 | 42.16 |
| Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 35.42 | 41.9 |
| CDX90592 | Canola | cytosol, nucleus, peroxisome | 35.42 | 41.9 |
| CDY48286 | Canola | cytosol | 35.12 | 41.7 |
| CDY09765 | Canola | cytosol, nucleus, peroxisome | 34.82 | 41.2 |
| CDY22924 | Canola | cytosol | 34.52 | 40.99 |
| AT4G15417.2 | Thale cress | mitochondrion | 34.23 | 39.79 |
| EES13704 | Sorghum | cytosol | 31.55 | 36.43 |
| Os06t0358800-01 | Rice | cytosol | 30.95 | 34.78 |
| Solyc10g006210.1.1 | Tomato | cytosol | 11.01 | 34.26 |
| TraesCS7D01G344100.1 | Wheat | cytosol | 30.95 | 33.66 |
| TraesCS7B01G248100.1 | Wheat | cytosol | 30.95 | 33.66 |
| TraesCS7A01G336500.1 | Wheat | cytosol | 30.65 | 33.01 |
| TraesCS7D01G344200.1 | Wheat | cytosol | 30.65 | 32.91 |
| Zm00001d032362_P002 | Maize | mitochondrion | 30.06 | 30.7 |
| HORVU7Hr1G082860.4 | Barley | plastid | 31.25 | 29.25 |
| TraesCS2D01G479300.1 | Wheat | plastid | 25.6 | 24.86 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 28.87 | 24.81 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 26.49 | 6.58 |
| Solyc06g048960.2.1 | Tomato | vacuole | 26.19 | 6.29 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 24.4 | 6.23 |
| Solyc11g008520.1.1 | Tomato | nucleus | 26.19 | 6.16 |
| Solyc08g067210.2.1 | Tomato | nucleus | 24.7 | 5.8 |
| Solyc07g005030.2.1 | Tomato | cytosol | 25.3 | 5.53 |
| Solyc10g005130.2.1 | Tomato | nucleus | 28.87 | 5.14 |
| GSMUA_Achr10P... | Banana | extracellular | 1.79 | 3.21 |
| GSMUA_Achr9P22470_001 | Banana | cytosol | 2.08 | 1.83 |
| Solyc08g067200.1.1 | Tomato | cytosol | 1.19 | 1.37 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:3.30.160.20 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016442 | GO:GO:0016787 | GO:GO:0030422 | GO:GO:0040029 |
| GO:GO:0090501 | GO:GO:0090502 | InterPro:IPR000999 | InterPro:IPR036389 | UniProt:K4BZQ9 | PFAM:PF00636 |
| PFscan:PS50142 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF35 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00535 |
| SUPFAM:SSF54768 | SUPFAM:SSF69065 | EnsemblPlantsGene:Solyc05g024210.1 | EnsemblPlants:Solyc05g024210.1.1 | UniParc:UPI0002765AD0 | : |
Description
No Description!
Coordinates
chr5:-:30840562..30842343
Molecular Weight (calculated)
38532.9 Da
IEP (calculated)
5.186
GRAVY (calculated)
-0.538
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVNKVEENP ACLDILSSQN LHLTEEMEVN KVEENPATLN ILSSQIEENK VEENVASLNI PLSQNLHLTQ ENSRNHLTHD DDDDKQWRRL VEELEETIRY
101: KFKNPNLLHE AFTHPSFQQN NKSYERLELL GDSILNMLIT KKQFFDYPNL PPGMLTKLRS ANVDNEKLAR AASKYNLHNY LHHKMSLFEG QVKEFKDAIL
201: EYPLHSLGLV DPPKTLADIV ESLIGAISID SDCMNTTWQV VNFLLEPLIT PEKLELNPIT KMYELCQKNG LKTRFVDKWA ECGEFEVYVD EQLVGRGKSS
301: GKKITAKNRA AHNAYFKILQ ILGEKATIAN RDGIET
101: KFKNPNLLHE AFTHPSFQQN NKSYERLELL GDSILNMLIT KKQFFDYPNL PPGMLTKLRS ANVDNEKLAR AASKYNLHNY LHHKMSLFEG QVKEFKDAIL
201: EYPLHSLGLV DPPKTLADIV ESLIGAISID SDCMNTTWQV VNFLLEPLIT PEKLELNPIT KMYELCQKNG LKTRFVDKWA ECGEFEVYVD EQLVGRGKSS
301: GKKITAKNRA AHNAYFKILQ ILGEKATIAN RDGIET
001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL
Arabidopsis Description
ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.