Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr9P22470_001 | Banana | cytosol | 28.88 | 14.14 |
GSMUA_Achr5P10880_001 | Banana | cytosol | 43.32 | 5.07 |
GSMUA_Achr8P12350_001 | Banana | nucleus | 35.83 | 3.69 |
TraesCS7D01G344200.1 | Wheat | cytosol | 5.35 | 3.19 |
TraesCS2D01G479300.1 | Wheat | plastid | 5.88 | 3.18 |
VIT_12s0059g01120.t01 | Wine grape | cytosol | 4.81 | 3.14 |
HORVU7Hr1G082860.4 | Barley | plastid | 5.88 | 3.06 |
TraesCS7D01G344100.1 | Wheat | cytosol | 4.81 | 2.91 |
TraesCS7B01G248100.1 | Wheat | cytosol | 4.81 | 2.91 |
AT4G15417.2 | Thale cress | mitochondrion | 4.28 | 2.77 |
PGSC0003DMT400053499 | Potato | mitochondrion | 4.28 | 2.75 |
TraesCS7A01G336500.1 | Wheat | cytosol | 4.28 | 2.56 |
Bra039552.1-P | Field mustard | cytosol | 3.74 | 2.47 |
CDY22924 | Canola | cytosol | 3.74 | 2.47 |
CDY48286 | Canola | cytosol | 3.74 | 2.47 |
Bra012789.1-P | Field mustard | cytosol, nucleus, peroxisome | 3.74 | 2.46 |
CDX90592 | Canola | cytosol, nucleus, peroxisome | 3.74 | 2.46 |
CDY09765 | Canola | cytosol, nucleus, peroxisome | 3.74 | 2.46 |
GSMUA_Achr7P11120_001 | Banana | cytosol, nucleus, plastid | 5.35 | 2.46 |
Solyc05g041920.2.1 | Tomato | cytosol | 3.21 | 2.26 |
Zm00001d032362_P002 | Maize | mitochondrion | 3.74 | 2.13 |
GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus, plastid | 1.6 | 2.08 |
EES13704 | Sorghum | cytosol | 3.21 | 2.06 |
GSMUA_Achr7P11130_001 | Banana | cytosol, nucleus, plastid | 3.74 | 2.05 |
Solyc07g049160.2.1 | Tomato | mitochondrion | 3.21 | 2.05 |
Os06t0358800-01 | Rice | cytosol | 3.21 | 2.01 |
Solyc05g024210.1.1 | Tomato | cytosol | 3.21 | 1.79 |
GSMUA_Achr2P15170_001 | Banana | cytosol | 3.21 | 1.76 |
PGSC0003DMT400001805 | Potato | mitochondrion | 2.67 | 1.71 |
GSMUA_Achr10P... | Banana | nucleus | 5.88 | 1.66 |
PGSC0003DMT400001808 | Potato | cytosol | 2.14 | 1.59 |
Solyc07g049150.2.1 | Tomato | cytosol | 2.14 | 1.49 |
PGSC0003DMT400086351 | Potato | cytosol | 1.07 | 0.99 |
GSMUA_Achr9P22460_001 | Banana | cytosol, golgi, nucleus | 6.95 | 0.95 |
GSMUA_Achr10P... | Banana | cytosol | 2.14 | 0.95 |
GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 4.81 | 0.81 |
Protein Annotations
Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr10G28140_001 |
EnsemblPlants:GSMUA_Achr10P28140_001 | EnsemblPlants:GSMUA_Achr10T28140_001 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | UniProt:M0RM38 | InterPro:P-loop_NTPase |
PFAM:PF00270 | PFscan:PS51192 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | SUPFAM:SSF52540 | TMHMM:TMhelix |
UniParc:UPI000295518B | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G28140_001]
Coordinates
chr10:-:31057809..31063574
Molecular Weight (calculated)
21807.0 Da
IEP (calculated)
7.955
GRAVY (calculated)
0.091
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGCSCTYSN TPCSLIVFFF SFILYFDVLL WQQYETIKVH TDVDVQYCCG AKAVDARSIA SWQKEVSTYQ VMVMTPQILL DVPRKGFLNL DMVHLMVIDE
101: CHHALGNHPY NRLMKEFYHK SVLKPHIFGM TASPILRKGK FDAIDEYMYY AEAKLRTMAF GICELNWLKM IHRDLKILCC TMTTKQQ
101: CHHALGNHPY NRLMKEFYHK SVLKPHIFGM TASPILRKGK FDAIDEYMYY AEAKLRTMAF GICELNWLKM IHRDLKILCC TMTTKQQ
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.