Factsheet for PGSC0003DMT400086351

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g024210.1.1	Tomato	cytosol	83.25	50.3
PGSC0003DMT400001808	Potato	cytosol	54.19	43.82
PGSC0003DMT400053499	Potato	mitochondrion	56.16	39.18
VIT_12s0059g01120.t01	Wine grape	cytosol	49.26	34.84
PGSC0003DMT400001805	Potato	mitochondrion	50.25	34.81
CDY48286	Canola	cytosol	46.31	33.22
Bra039552.1-P	Field mustard	cytosol	45.32	32.51
CDY22924	Canola	cytosol	44.83	32.16
CDY09765	Canola	cytosol, nucleus, peroxisome	44.83	32.04
CDX90592	Canola	cytosol, nucleus, peroxisome	44.34	31.69
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	44.34	31.69
EES13704	Sorghum	cytosol	41.87	29.21
AT4G15417.2	Thale cress	mitochondrion	41.38	29.07
Os06t0358800-01	Rice	cytosol	40.89	27.76
TraesCS7A01G336500.1	Wheat	cytosol	39.9	25.96
TraesCS7D01G344100.1	Wheat	cytosol	39.41	25.89
TraesCS7B01G248100.1	Wheat	cytosol	39.41	25.89
TraesCS7D01G344200.1	Wheat	cytosol	38.92	25.24
Zm00001d032362_P002	Maize	mitochondrion	39.9	24.62
PGSC0003DMT400037378	Potato	cytosol	33.0	22.64
HORVU7Hr1G082860.4	Barley	plastid	39.9	22.56
PGSC0003DMT400033487	Potato	cytosol	36.45	20.16
TraesCS2D01G479300.1	Wheat	plastid	32.51	19.08
PGSC0003DMT400042918	Potato	nucleus	30.05	5.53
PGSC0003DMT400029301	Potato	nucleus	34.48	3.66
GSMUA_Achr10P...	Banana	extracellular	0.99	1.07
GSMUA_Achr9P22470_001	Banana	cytosol	0.99	0.52
PGSC0003DMT400019213	Potato	cytosol, peroxisome, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR036389	UniProt:M1DBJ7
PFAM:PF00636	EnsemblPlantsGene:PGSC0003DMG400035922	PGSC:PGSC0003DMG400035922	EnsemblPlants:PGSC0003DMT400086351	PFscan:PS50142	PANTHER:PTHR14950
PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065
UniParc:UPI0002957DAF	SEG:seg	:	:	:	:

Description

Dicer-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400035922]

Coordinates

chr5:+:16623918..16625275

Molecular Weight (calculated)

23168.8 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.445

Length

203 amino acids

Sequence
(BLAST)

001: MLVTKKQFFD YPDLPPGKLT TLRSANVDNE KLARVAIKYN LHNYLRHKMT LFEGQVKEFK EAILEYPLHS VGLIDPPKTL ADIVESLIGA VSIDSDCMNT
101: TWQVVNFLLE PLTTPEKLER NPITKMYELC QKNGLKTEFV DKWDENGEFE VFVDEIFVGK GKSSGKKITA KNRAAHNAYY QVLRILSEKA TIDNDQHCDG
201: KQS

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.