Factsheet for PGSC0003DMT400037378

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006210.1.1	Tomato	cytosol	34.12	93.52
PGSC0003DMT400033487	Potato	cytosol	55.41	44.69
Os05t0271300-00	Rice	cytosol, nucleus, plastid	40.88	38.17
TraesCS7A01G513500.1	Wheat	nucleus	40.54	37.85
Os01t0551100-01	Rice	cytosol	31.08	35.94
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	39.86	34.6
PGSC0003DMT400086351	Potato	cytosol	22.64	33.0
GSMUA_Achr2P15170_001	Banana	cytosol	37.84	32.94
PGSC0003DMT400001808	Potato	cytosol	27.7	32.67
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	40.54	32.61
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	40.88	32.53
TraesCS7A01G512700.1	Wheat	mitochondrion	39.86	32.51
Zm00001d009879_P002	Maize	plastid	41.22	32.45
TraesCS7D01G504300.3	Wheat	mitochondrion	40.54	32.43
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	39.86	31.81
TraesCS7B01G428200.1	Wheat	mitochondrion	39.19	31.78
TraesCS7B01G430900.2	Wheat	mitochondrion	39.86	31.55
TraesCSU01G086900.1	Wheat	mitochondrion	39.53	31.54
HORVU7Hr1G115000.1	Barley	nucleus	19.26	30.32
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	41.55	30.22
HORVU7Hr1G115100.2	Barley	plastid	41.22	29.9
PGSC0003DMT400053499	Potato	mitochondrion	28.04	28.52
KXG21693	Sorghum	plastid	41.55	27.83
PGSC0003DMT400001805	Potato	mitochondrion	27.03	27.3
PGSC0003DMT400042918	Potato	nucleus	27.7	7.43
PGSC0003DMT400029301	Potato	nucleus	32.09	4.96
PGSC0003DMT400019213	Potato	cytosol, peroxisome, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	GO:GO:0090502
InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	UniProt:M1B5A4	PFAM:PF00636	EnsemblPlantsGene:PGSC0003DMG400014420
PGSC:PGSC0003DMG400014420	EnsemblPlants:PGSC0003DMT400037378	PFscan:PS50137	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35
InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI0002956B76
InterPro:dsRBD_dom	:	:	:	:	:

Description

Ribonuclease III [Source:PGSC_GENE;Acc:PGSC0003DMG400014420]

Coordinates

chr10:-:1179555..1182732

Molecular Weight (calculated)

33398.2 Da

IEP (calculated)

4.926

GRAVY (calculated)

-0.226

Length

296 amino acids

Sequence
(BLAST)

001: MQPPEVCAMV TDANRLPPPE EEITNTATSV QAVEELLKYR FKNTKLLEEA LTHSSCPNLI TNYQRLAFVG DAALGLAISS YFFMTYPDVD CGKLTDLRSA
101: NVSTEKLARV AVRHGLYEYL RRDSAILDEK VKEFVITVQQ EEEMEFYGGM IKTPKVLADI VESVMGAVYL DCGFDVNAVW VIFRGLLEPI IMLNTLEEQP
201: QPVTMLFGLC KKDGKQVDVE HRKEGDKNIA SVYLDGQFIA SASSEHKENA KLQVAKAALK ELFYNPCDKM DVEFVPFQRK KRDVESITFQ KKKDGC

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.