Factsheet for Zm00001d009879_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d003549_P001
Zm00001d009879_P002
Zm00001d010753_P001
Zm00001d016876_P001
Zm00001d018045_P001
Zm00001d025514_P001
Zm00001d037221_P001
Zm00001d042917_P001
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	Zm00001d003549_P001	AT1G54060.1	21798944
AT3G20420.1	Zm00001d010753_P001	AT1G54060.1	21798944
AT3G20420.1	Zm00001d016876_P001	AT1G54060.1	21798944
AT3G20420.1	Zm00001d025514_P001	AT1G54060.1	21798944
AT3G20420.1	Zm00001d042917_P001	AT1G54060.1	21798944
AT3G20420.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT3G20420.1	Zm00001d009879_P002	AT3G20420.1	21798944
AT3G20420.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT3G20420.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT3G20420.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT3G20420.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0271300-00	Rice	cytosol, nucleus, plastid	70.48	83.6
TraesCS7A01G513500.1	Wheat	nucleus	67.55	80.13
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	76.86	78.53
KXG21693	Sorghum	plastid	92.02	78.28
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	76.86	77.69
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	76.6	77.63
TraesCS7A01G512700.1	Wheat	mitochondrion	74.73	77.41
TraesCS7D01G504300.3	Wheat	mitochondrion	76.06	77.3
TraesCS7B01G430900.2	Wheat	mitochondrion	76.86	77.27
TraesCSU01G086900.1	Wheat	mitochondrion	75.27	76.28
TraesCS7B01G428200.1	Wheat	mitochondrion	73.4	75.62
HORVU7Hr1G115000.1	Barley	nucleus	37.23	74.47
HORVU7Hr1G115100.2	Barley	plastid	76.6	70.59
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	52.93	58.36
VIT_19s0090g00940.t01	Wine grape	cytosol	46.01	51.34
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	55.32	51.11
GSMUA_Achr2P15170_001	Banana	cytosol	44.15	48.82
PGSC0003DMT400033487	Potato	cytosol	47.07	48.23
Solyc10g006210.1.1	Tomato	cytosol	13.83	48.15
KRH14361	Soybean	cytosol	43.88	47.83
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	46.28	44.5
CDY54644	Canola	cytosol	39.1	43.88
Bra035784.1-P	Field mustard	cytosol	39.1	43.88
PGSC0003DMT400037378	Potato	cytosol	32.45	41.22
CDY29825	Canola	plastid	40.16	40.27
AT3G20420.1	Thale cress	plastid	39.89	38.36
Zm00001d032362_P002	Maize	mitochondrion	28.19	32.22
AT5G45150.1	Thale cress	cytosol	29.52	11.6
Zm00001d013797_P006	Maize	nucleus	19.41	9.93
Zm00001d025830_P011	Maize	cytosol, nucleus, plasma membrane	28.99	6.77
Zm00001d027412_P004	Maize	cytosol, nucleus, plastid	34.04	6.63
Zm00001d042432_P007	Maize	cytosol	28.46	6.41
Zm00001d032655_P006	Maize	nucleus	25.27	6.05
Zm00001d013796_P005	Maize	cytosol, endoplasmic reticulum, nucleus	22.34	5.73

Protein Annotations

Gene3D:1.10.1520.10	EntrezGene:100272891	MapMan:12.5.1.12	Gene3D:3.30.160.20	ProteinID:AQK92903.1	UniProt:B4FRF5
EMBL:BT039693	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004525	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR014720
InterPro:IPR036389	PFAM:PF00035	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142
PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535
SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI00017B8257	EnsemblPlantsGene:Zm00001d009879	EnsemblPlants:Zm00001d009879_P002	EnsemblPlants:Zm00001d009879_T002
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

Ribonuclease 3-like protein 2

Coordinates

chr8:+:86964414..86974986

Molecular Weight (calculated)

41338.4 Da

IEP (calculated)

8.891

GRAVY (calculated)

-0.092

Length

376 amino acids

Sequence
(BLAST)

001: MTPSKPPGKR RRSAPPPRLP SPAPPVALSP PGFVADRAEA AARVERLLRY QFCDRALLEE ALTHQSFSDG ALSYQRLEFV GDAALGLAFS NFLYLTNPTL
101: GPGALSTLRA ANISTEKLAR VAVRHDLYPL LRRKCPRLDL LVGQFIESVK QELMHDLATA PYGGSVVKAP KVLADIVEAI AAAVYVDCKF DLEKLWKVTR
201: WLFEPIITAE TIDEQPVTTL HELCQKHGKV AQFKTWQKDG MIVVNVFVGG EMVGLGSSEQ KVIAKLNAAR DALGKLIGGA KQQVLINCAA NGLVDDIAEL
301: RECKQKLIEQ CIRKHWPKPI FKLEKEGGPA HERNFVCSVQ VDTQTGTFVT IGESMSRVKD AENSAAHKMV ELLLKL

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.