CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255
EES12241
KXG21693
KXG27287
KXG30464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	EES12241	AT1G54060.1	21798944
AT3G20420.1	KXG30464	AT1G54060.1	21798944
AT3G20420.1	KXG27287	AT1G71230.1	21798944
AT3G20420.1	KXG21693	AT3G20420.1	21798944
AT3G20420.1	EER88112	AT3G47620.1	21798944
AT3G20420.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009879_P002	Maize	plastid	78.28	92.02
Os05t0271300-00	Rice	cytosol, nucleus, plastid	58.82	82.02
TraesCS7A01G513500.1	Wheat	nucleus	55.43	77.29
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	63.35	76.09
TraesCS7A01G512700.1	Wheat	mitochondrion	62.44	76.03
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	63.57	75.54
TraesCS7B01G430900.2	Wheat	mitochondrion	63.57	75.13
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	62.9	74.93
TraesCS7D01G504300.3	Wheat	mitochondrion	62.67	74.86
TraesCS7B01G428200.1	Wheat	mitochondrion	61.31	74.25
TraesCSU01G086900.1	Wheat	mitochondrion	62.22	74.12
HORVU7Hr1G115000.1	Barley	nucleus	31.0	72.87
HORVU7Hr1G115100.2	Barley	plastid	63.57	68.87
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	45.02	58.36
VIT_19s0090g00940.t01	Wine grape	cytosol	39.37	51.63
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	47.29	51.35
GSMUA_Achr2P15170_001	Banana	cytosol	37.78	49.12
PGSC0003DMT400033487	Potato	cytosol	39.37	47.41
KRH14361	Soybean	cytosol	36.88	47.25
Solyc10g006210.1.1	Tomato	cytosol	11.54	47.22
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	38.91	43.99
CDY54644	Canola	cytosol	33.26	43.88
Bra035784.1-P	Field mustard	cytosol	33.26	43.88
PGSC0003DMT400037378	Potato	cytosol	27.83	41.55
CDY29825	Canola	plastid	34.39	40.53
AT3G20420.1	Thale cress	plastid	33.94	38.36
EES13704	Sorghum	cytosol	22.62	34.36
AT5G45150.1	Thale cress	cytosol	25.57	11.81
KXG38096	Sorghum	plastid	17.19	9.77
OQU81938	Sorghum	mitochondrion	24.89	6.61
KXG33962	Sorghum	nucleus	24.66	6.58
KXG40313	Sorghum	cytosol, nucleus, plastid	28.51	6.53
OQU91611	Sorghum	nucleus, plastid	23.76	6.41
OQU91441	Sorghum	nucleus	18.55	5.92

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	EntrezGene:8061288	UniProt:A0A1B6P7R5	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525
GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389
EnsemblPlants:KXG21693	ProteinID:KXG21693	ProteinID:KXG21693.1	PFAM:PF00035	PFAM:PF00636	ScanProsite:PS00517
PFscan:PS50137	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf
SMART:SM00358	SMART:SM00535	EnsemblPlantsGene:SORBI_3009G096100	SUPFAM:SSF54768	SUPFAM:SSF69065	unigene:Sbi.15406
TMHMM:TMhelix	UniParc:UPI00081AC7D9	InterPro:dsRBD_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:32785840..32812068

Molecular Weight (calculated)

48482.9 Da

IEP (calculated)

7.387

GRAVY (calculated)

-0.022

Length

442 amino acids

Sequence
(BLAST)

001: MTPSQNPCKR RHPTPPPPSA ASPAAPVALS LPGFVADRAE AAVRVERLLR YQFCDRALLE EALTHQSFSD GAFSYQRLEF VGDAALGLAF SNFLYLTNPT
101: LGPGALSTLR AANISTEKLA RVAVRHDLYP LLRRKCARLD LLVGRWIGAW ETCGYICAIG LFFQAQKDWE LGLETIGDGC FPFLPKILDW EALLGTLGDA
201: FTDCKKKVGQ FIESVKQEVM HDLATAPYGG SVVKAPKVLA DIVEAIAAAV YVDCKFDLEK LWKVTRWLFE PVITAETVDE QPVTTLHELC QKHGKVAQFE
301: TWQKGGMTMV NVFVGGEMVG LGSSEQKVIA KLNAARDALG KLIGGAKQQV LINGIANGLV DEIVELRECK QKLTEQCIGK HWPKPIFKLE KEGGPAHERN
401: FVCSVQVDTK TGTFVTIGDP MSRVKDAENS AAQKMVELLL KL

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.