Factsheet for Solyc12g014410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc03g122030.1.1
Solyc06g073150.2.1
Solyc11g017300.1.1
Solyc12g014410.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	Solyc03g122030.1.1	AT1G54060.1	21798944
AT3G20420.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT3G20420.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT3G20420.1	Solyc12g014410.1.1	AT3G20420.1	21798944
AT3G20420.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033487	Potato	cytosol	86.19	91.83
VIT_19s0090g00940.t01	Wine grape	cytosol	53.2	61.72
Solyc10g006210.1.1	Tomato	cytosol	16.11	58.33
KRH14361	Soybean	cytosol	49.87	56.52
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	43.22	49.56
Bra035784.1-P	Field mustard	cytosol	42.46	49.55
CDY54644	Canola	cytosol	42.46	49.55
Os05t0271300-00	Rice	cytosol, nucleus, plastid	38.11	47.0
Zm00001d009879_P002	Maize	plastid	44.5	46.28
CDY29825	Canola	plastid	44.25	46.13
GSMUA_Achr2P15170_001	Banana	cytosol	39.39	45.29
AT3G20420.1	Thale cress	plastid	45.01	45.01
TraesCS7A01G512700.1	Wheat	mitochondrion	41.69	44.9
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	42.71	44.89
TraesCS7D01G504300.3	Wheat	mitochondrion	42.46	44.86
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	42.2	44.84
TraesCS7A01G513500.1	Wheat	nucleus	36.32	44.8
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	42.46	44.74
TraesCS7B01G430900.2	Wheat	mitochondrion	41.94	43.85
TraesCSU01G086900.1	Wheat	mitochondrion	40.92	43.13
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	43.99	42.26
TraesCS7B01G428200.1	Wheat	mitochondrion	39.13	41.92
HORVU7Hr1G115100.2	Barley	plastid	42.2	40.44
HORVU7Hr1G115000.1	Barley	nucleus	18.93	39.36
KXG21693	Sorghum	plastid	43.99	38.91
Os01t0551100-01	Rice	cytosol	24.3	37.11
Solyc05g041920.2.1	Tomato	cytosol	23.27	34.21
Solyc07g049150.2.1	Tomato	cytosol	23.27	33.96
Solyc07g049160.2.1	Tomato	mitochondrion	23.53	31.4
Solyc05g024210.1.1	Tomato	cytosol	24.81	28.87
AT5G45150.1	Thale cress	cytosol	30.69	12.54
Solyc07g005030.2.1	Tomato	cytosol	28.64	7.29
Solyc08g067210.2.1	Tomato	nucleus	26.6	7.27
Solyc11g008540.1.1	Tomato	mitochondrion	22.76	6.58
Solyc10g005130.2.1	Tomato	nucleus	31.2	6.46
Solyc11g008530.1.1	Tomato	mitochondrion	21.74	6.45
Solyc06g048960.2.1	Tomato	vacuole	22.76	6.36
Solyc11g008520.1.1	Tomato	nucleus	22.25	6.09
Solyc08g067200.1.1	Tomato	cytosol	1.79	2.41

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422	GO:GO:0040029
GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	UniProt:K4DCX6
PFAM:PF00035	PFAM:PF00636	PFAM:PF14709	ScanProsite:PS00517	PFscan:PS50137	PFscan:PS50142
PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00535
SUPFAM:SSF54768	SUPFAM:SSF69065	EnsemblPlantsGene:Solyc12g014410.1	EnsemblPlants:Solyc12g014410.1.1	UniParc:UPI000276A7D7	InterPro:dsRBD_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:5352607..5354889

Molecular Weight (calculated)

43867.8 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.237

Length

391 amino acids

Sequence
(BLAST)

001: MQFIQSTDKS LFLHNHHQNR VPLTHRIMME SPESCVILTN PINKSIALIP DDDYIITDMA ASIRAVEEIL DYNFKNKKLL EQALTHSSCT DSPSYQRLEF
101: VGDAALGLAI SNFVYLTYPE LDPGQLSLLR SANVSTEKLA RVAVKHSLYK FVRHNTTTLD EKVKEFVIAV EQEEEAEVHG GVMKAPKVLA DIVESVVAAV
201: YVDMHFDLKL LWKKINRLLE PIITLDLLAQ QPQPVTMLYE LCQKDGKHVD IKHWRKEEKD IASVYVDGQF VVSATSENKE NAKLHAAKSA ITKLACNHTS
301: KLDLEVEPNT EFGGAKQKLN ELCGRKKWPA PTYRIEKQVG PSHDRRFICS VQVAVAKGVV FVMGDEKTRV KDAENSAASA MIWGLQGSNL S

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.