Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g076420.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | Solyc04g076420.2.1 | AT1G09700.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042918 | Potato | nucleus | 75.98 | 96.29 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 85.78 | 88.76 |
| Solyc11g008520.1.1 | Tomato | nucleus | 83.56 | 81.86 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 76.63 | 81.4 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 59.19 | 59.35 |
| KRH11802 | Soybean | cytosol | 11.72 | 57.54 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 54.68 | 54.1 |
| AT3G03300.1 | Thale cress | nucleus | 53.61 | 54.03 |
| Bra031999.1-P | Field mustard | nucleus | 49.11 | 53.8 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 53.11 | 53.53 |
| CDY50692 | Canola | nucleus | 53.04 | 53.42 |
| KRH36816 | Soybean | cytosol | 53.82 | 52.99 |
| Os03t0583900-01 | Rice | nucleus | 45.75 | 45.39 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 44.96 | 44.9 |
| OQU91441 | Sorghum | nucleus | 44.46 | 44.88 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 43.32 | 44.86 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 44.82 | 44.82 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 24.37 | 43.27 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 44.1 | 42.12 |
| HORVU5Hr1G019300.8 | Barley | plastid | 44.25 | 41.97 |
| Zm00001d013797_P006 | Maize | nucleus | 20.01 | 38.1 |
| Solyc10g006210.1.1 | Tomato | cytosol | 2.93 | 37.96 |
| Solyc08g067200.1.1 | Tomato | cytosol | 7.79 | 37.46 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 3.79 | 37.06 |
| KXG38096 | Sorghum | plastid | 20.51 | 36.89 |
| Solyc07g005030.2.1 | Tomato | cytosol | 30.38 | 27.67 |
| Solyc05g041920.2.1 | Tomato | cytosol | 5.22 | 27.44 |
| Solyc07g049160.2.1 | Tomato | mitochondrion | 5.65 | 26.96 |
| Solyc07g049150.2.1 | Tomato | cytosol | 5.15 | 26.87 |
| Solyc05g024210.1.1 | Tomato | cytosol | 6.29 | 26.19 |
| Solyc08g067210.2.1 | Tomato | nucleus | 25.3 | 24.76 |
| Solyc10g005130.2.1 | Tomato | nucleus | 31.24 | 23.15 |
| Solyc12g014410.1.1 | Tomato | cytosol, nucleus, plastid | 6.36 | 22.76 |
Protein Annotations
Description
No Description!
Coordinates
chr6:-:32061372..32073856
Molecular Weight (calculated)
157874.0 Da
IEP (calculated)
6.878
GRAVY (calculated)
-0.073
Length
1399 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLQSLKTNSS PLTLCLLLEG CYQLEALETA LKQNTIVYLE TGSGKTLIAI MLLRSYAYLL RKPSPYIAVF LVPTVVLVTQ QGDSLMMHTD LKVGKYWGEM
0101: GVDYWDAATW QRQVDAHEVL VMTPAILLAA LRHSFIQINM IKVIIFDECH NARGKHPYAS IMMEFYHRQL TRQSLQLPRV FGMTASPIKS KGSSTADSYW
0201: QKIRDLENLM NSKVYTCGSE SVLAEYIPFS NPKLKIYKHV DIPCTLFLSL AHDLEQLKEM HDCSISKSNL SFMSAGTARR RLSKLYSAFL FCLSEMGAWL
0301: AFKATEFLSR EEVDFLSWGE LDVCAQTIVR DFSWGASKIF SARLPSGPYW SIGGDIQANV DAGYLSSKVT CLLESLLEYR DQKDLRCIIF VERIITAIVL
0401: RSLLNELLPE LCGWRTEYTA GHISVVQSQS RKLQNKIVEE FRKGLVNIIV ATSILEEGLD VQSCNLVIRF DPSATVCSFI QSRGRARMQN SDFLLMVRSG
0501: DDSTLTRMHN YMASGEIMRQ ESLCHASIPC SPLDDELYDE PCYKVESTGA IVTLSSSVSL LYLYCSRLPS DGYFKPNPRC VIDKETGTCT LQLPKSCPLQ
0601: RIISVQGNSK ISKQLACLEA CKELHRVGAL TDNLVPDIME EETINKELEC QIHTVEELKY FPPELVSHCG NDSEAVYYCY LVELQHDACN DFQLHGIILA
0701: VRTRLKFDDE IMAFDLDIDR RGRLQVQLNY HNVVTLTSEE IQRCRRFQSS IFRILLDRDL SKLQGALAAV QSPIGSAVSD YLLLPSLGTT PEINWKCVNS
0801: LLFPSQALEA KHMDCCSTQG RKRSVSTKTG VICSCMLENS LVFTPHNGHI YCITGFLDNL DCNSLLDTRT GEPITYIEYY KKRHGINICF EEEPLLRGKH
0901: ICKVHNYLQR CRIQKAKDST DSSVELPPEL CSLIMSPVSI STLNTYSYVP SIMHRIESLV MALNLKRMHL DHCTLDIFIP TIKVLEAVTT KKCLEKFHLE
1001: SLETLGDSFL KYASSIQLFK TYENHHEGLL TIKKNKIISN DALCRLGCAR KIPGFIRNEP FDLKAWLIPG DNSQIQTFDE EFLTSSDKMY SRGKQKFRSK
1101: RVADVVEALI GAYLSSGGEV AALSFMKWLG VDIDFVDAPL PRNFPMNAEK LINVRYLESL LHYKFNDPSL LVEALTHGSY MLPEIPRCYQ RLEFLGDAVL
1201: DYVVTAHLYF KYPGLTPGLI TDLRSASVNN ECYAQSAVKA GLHKHILHAS QDLQRQILST VEDFEKLDLL SMFGWEAETT FPKVLGDVIE SLGGAIFVDS
1301: GFNKDITFQS IRPLLEPLVT PQTVKLQPVR ELSELCDQKG YIKKKDVISR ENGLAYITVE VEANGVIHKS TCSGRDKIMA KKVASKNVLK SLKECPSNA
0101: GVDYWDAATW QRQVDAHEVL VMTPAILLAA LRHSFIQINM IKVIIFDECH NARGKHPYAS IMMEFYHRQL TRQSLQLPRV FGMTASPIKS KGSSTADSYW
0201: QKIRDLENLM NSKVYTCGSE SVLAEYIPFS NPKLKIYKHV DIPCTLFLSL AHDLEQLKEM HDCSISKSNL SFMSAGTARR RLSKLYSAFL FCLSEMGAWL
0301: AFKATEFLSR EEVDFLSWGE LDVCAQTIVR DFSWGASKIF SARLPSGPYW SIGGDIQANV DAGYLSSKVT CLLESLLEYR DQKDLRCIIF VERIITAIVL
0401: RSLLNELLPE LCGWRTEYTA GHISVVQSQS RKLQNKIVEE FRKGLVNIIV ATSILEEGLD VQSCNLVIRF DPSATVCSFI QSRGRARMQN SDFLLMVRSG
0501: DDSTLTRMHN YMASGEIMRQ ESLCHASIPC SPLDDELYDE PCYKVESTGA IVTLSSSVSL LYLYCSRLPS DGYFKPNPRC VIDKETGTCT LQLPKSCPLQ
0601: RIISVQGNSK ISKQLACLEA CKELHRVGAL TDNLVPDIME EETINKELEC QIHTVEELKY FPPELVSHCG NDSEAVYYCY LVELQHDACN DFQLHGIILA
0701: VRTRLKFDDE IMAFDLDIDR RGRLQVQLNY HNVVTLTSEE IQRCRRFQSS IFRILLDRDL SKLQGALAAV QSPIGSAVSD YLLLPSLGTT PEINWKCVNS
0801: LLFPSQALEA KHMDCCSTQG RKRSVSTKTG VICSCMLENS LVFTPHNGHI YCITGFLDNL DCNSLLDTRT GEPITYIEYY KKRHGINICF EEEPLLRGKH
0901: ICKVHNYLQR CRIQKAKDST DSSVELPPEL CSLIMSPVSI STLNTYSYVP SIMHRIESLV MALNLKRMHL DHCTLDIFIP TIKVLEAVTT KKCLEKFHLE
1001: SLETLGDSFL KYASSIQLFK TYENHHEGLL TIKKNKIISN DALCRLGCAR KIPGFIRNEP FDLKAWLIPG DNSQIQTFDE EFLTSSDKMY SRGKQKFRSK
1101: RVADVVEALI GAYLSSGGEV AALSFMKWLG VDIDFVDAPL PRNFPMNAEK LINVRYLESL LHYKFNDPSL LVEALTHGSY MLPEIPRCYQ RLEFLGDAVL
1201: DYVVTAHLYF KYPGLTPGLI TDLRSASVNN ECYAQSAVKA GLHKHILHAS QDLQRQILST VEDFEKLDLL SMFGWEAETT FPKVLGDVIE SLGGAIFVDS
1301: GFNKDITFQS IRPLLEPLVT PQTVKLQPVR ELSELCDQKG YIKKKDVISR ENGLAYITVE VEANGVIHKS TCSGRDKIMA KKVASKNVLK SLKECPSNA
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.