Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G024480.3 | |
| HORVU5Hr1G047100.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | HORVU4Hr1G024480.3 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | HORVU5Hr1G047100.5 | AT1G09700.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 89.49 | 94.35 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 88.95 | 93.65 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 85.56 | 93.41 |
| Os03t0583900-01 | Rice | nucleus | 66.64 | 69.72 |
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 6.64 | 68.53 |
| OQU91441 | Sorghum | nucleus | 62.71 | 66.74 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 63.86 | 64.3 |
| Zm00001d013797_P006 | Maize | nucleus | 28.95 | 58.1 |
| KXG38096 | Sorghum | plastid | 30.03 | 56.94 |
| KRH11802 | Soybean | cytosol | 9.42 | 48.77 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 43.86 | 46.38 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 41.08 | 44.82 |
| Solyc06g048960.2.1 | Tomato | vacuole | 41.97 | 44.25 |
| Bra031999.1-P | Field mustard | nucleus | 38.24 | 44.17 |
| AT3G03300.1 | Thale cress | nucleus | 41.49 | 44.09 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 41.02 | 43.59 |
| CDY50692 | Canola | nucleus | 40.88 | 43.41 |
| KRH36816 | Soybean | cytosol | 41.76 | 43.35 |
| PGSC0003DMT400042918 | Potato | nucleus | 32.27 | 43.12 |
| Solyc11g008520.1.1 | Tomato | nucleus | 41.63 | 43.0 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 40.61 | 42.36 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 37.63 | 42.14 |
| KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 18.44 | 34.52 |
| HORVU7Hr1G082860.4 | Barley | plastid | 7.12 | 29.25 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 29.56 | 26.67 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 28.61 | 25.04 |
| HORVU1Hr1G042710.5 | Barley | cytosol, mitochondrion, nucleus | 28.07 | 24.6 |
| HORVU4Hr1G084890.7 | Barley | cytosol, nucleus, plastid | 30.1 | 22.23 |
| HORVU7Hr1G115100.2 | Barley | plastid | 5.63 | 20.34 |
| HORVU7Hr1G115000.1 | Barley | nucleus | 2.51 | 19.68 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 |
| UniProt:A0A287QJE8 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006396 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010216 |
| GO:GO:0010267 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0031047 | GO:GO:0040029 | GO:GO:0051214 |
| GO:GO:0090501 | GO:GO:0090502 | EnsemblPlantsGene:HORVU5Hr1G019300 | EnsemblPlants:HORVU5Hr1G019300.8 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 |
| InterPro:IPR036389 | InterPro:IPR038248 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00035 |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 |
| PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 |
| PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 |
| SUPFAM:SSF69065 | UniParc:UPI000B463C0C | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr5H:+:84450148..84493265
Molecular Weight (calculated)
165706.0 Da
IEP (calculated)
8.329
GRAVY (calculated)
-0.182
Length
1475 amino acids
Sequence
(BLAST)
(BLAST)
0001: PPLPFESKGE PEAKRPSSKT FAPKLTKSNP TSARHRFTRA PRQQPKRTRR LRRLAAAAPP ISFSRQPRIS SDTTMDAAAA AAPPAADSAV TEEAHKEDPE
0101: IVARWYQLEA LERAMSGNTV AFLDTGAGKT LIAGLLLRAY AHLVRKPARE FAVFLVPTRV LVEQQARVVE AHTDLRVSKF TGDMGVDFWD AAIWRRVVDD
0201: AEVLVMTPQI LLDNLRHSFF RLQDIALLIF DECHRAKGNS PYACILKEFY HPVMNSRPRG PLPRIFGMTA SPTDAKNQLQ ESYSKRIVEL ENLLNSKVYT
0301: VDNESALSEY IPFATTRIVE YDDSIIPSNS HNHINSCLDR LQEKHLKVLK ANLHGSSRKN AKKGISKLHK AFLYCTANLG VWLAAKAAEI HSTTNEQFLS
0401: FWGEELDKNV EGFVRSYSEE VYRELSCFSE RGHIGKDFEA DLQDGLLTPK VHCLVQFLLE YRHMQDIRCI VFVERVVTSI VLESLLSIIN QMPGWIIKHI
0501: AGNRPMLHNQ SRNKQTEIVD AFKGGKVHII VTTQVLEEGL NVPGCHLVIR FDPPTTGRSF IQSRGRARMP NSEYVLLVRR GDAEALSKTV KFLASGQMMR
0601: EASLKLASTM CQPLENTLLQ GEYYRVESTG ATVTMNSSVQ LIYFFCSKLP SDEYFTPLPR FIIDKELRTC TLYLPNSSPV QTVNAEGEVS ALKKAVCLKA
0701: CRELHAVGAL TDYLLPEFGF PCEEEPDIVV EKYQHEQPVY FPEEFVYNWS SFSRLGIYYC YKISVEGCLK TTYCPNDILL AVKCDLGPEF VSTSLQLFGA
0801: QDNASLAMKY VGIIHLNQEQ VVMARRFQTT ILSLLINKDH SEVSNAVKYS HEMQVSIGIV YLLLPLVSGK VDWCSIKFST SQVYVGSNKD IRHCHSCKQV
0901: DLLQTKDGPL CRCMLESSIV CTPHNSKFYA VNGFLDLNSK SLLHLRDGSA LTYINYFKTR HGLSLTHENQ PLLAARSPVE VRNFLHKRHY KNKKESCTSH
1001: GVELPPELCR LVMSPVSTNT LYSFSIIPSV MYRIQCLLLS AKLKDQLGPI MQQFAIPALK ILEAVTTKEC QEEFSQESLE TLGDSFLKYI ATQHLYVKHK
1101: LQHEGTLTKM KKNLISNAAL CQLACNNNLV GYIQGEEFNP KGWIIPGLGY DMCGNSKFSF LSSNDMHTLR KMSVRSKRIA DTVEALIGAY LGAAGEQAAF
1201: VFLKSLGLDI GFHSTIPLER KIVLKSEKFI NVRSLEMILG YEFKDTSLLV EALTHGSYQT AGTTACYQRL EFLGDAVLDH LFTIYFYNKY PECTPELLTD
1301: LRSASVNNNC YAHAAAKAGL NKHILHSSLP LHGRMAYYFE NFTKHRFTGP SHGWEAGIGL PKVLGDVIES LAGAIYLDSK YDKEVVWRSM KKLLEPLATP
1401: ETVERDPVKL LQEFCDRRSY SRSYTKVQKD GVSSVVGEVQ VEGTTYSATG TGPDKVVAKK LAAKLLLEDL KAIVP
0101: IVARWYQLEA LERAMSGNTV AFLDTGAGKT LIAGLLLRAY AHLVRKPARE FAVFLVPTRV LVEQQARVVE AHTDLRVSKF TGDMGVDFWD AAIWRRVVDD
0201: AEVLVMTPQI LLDNLRHSFF RLQDIALLIF DECHRAKGNS PYACILKEFY HPVMNSRPRG PLPRIFGMTA SPTDAKNQLQ ESYSKRIVEL ENLLNSKVYT
0301: VDNESALSEY IPFATTRIVE YDDSIIPSNS HNHINSCLDR LQEKHLKVLK ANLHGSSRKN AKKGISKLHK AFLYCTANLG VWLAAKAAEI HSTTNEQFLS
0401: FWGEELDKNV EGFVRSYSEE VYRELSCFSE RGHIGKDFEA DLQDGLLTPK VHCLVQFLLE YRHMQDIRCI VFVERVVTSI VLESLLSIIN QMPGWIIKHI
0501: AGNRPMLHNQ SRNKQTEIVD AFKGGKVHII VTTQVLEEGL NVPGCHLVIR FDPPTTGRSF IQSRGRARMP NSEYVLLVRR GDAEALSKTV KFLASGQMMR
0601: EASLKLASTM CQPLENTLLQ GEYYRVESTG ATVTMNSSVQ LIYFFCSKLP SDEYFTPLPR FIIDKELRTC TLYLPNSSPV QTVNAEGEVS ALKKAVCLKA
0701: CRELHAVGAL TDYLLPEFGF PCEEEPDIVV EKYQHEQPVY FPEEFVYNWS SFSRLGIYYC YKISVEGCLK TTYCPNDILL AVKCDLGPEF VSTSLQLFGA
0801: QDNASLAMKY VGIIHLNQEQ VVMARRFQTT ILSLLINKDH SEVSNAVKYS HEMQVSIGIV YLLLPLVSGK VDWCSIKFST SQVYVGSNKD IRHCHSCKQV
0901: DLLQTKDGPL CRCMLESSIV CTPHNSKFYA VNGFLDLNSK SLLHLRDGSA LTYINYFKTR HGLSLTHENQ PLLAARSPVE VRNFLHKRHY KNKKESCTSH
1001: GVELPPELCR LVMSPVSTNT LYSFSIIPSV MYRIQCLLLS AKLKDQLGPI MQQFAIPALK ILEAVTTKEC QEEFSQESLE TLGDSFLKYI ATQHLYVKHK
1101: LQHEGTLTKM KKNLISNAAL CQLACNNNLV GYIQGEEFNP KGWIIPGLGY DMCGNSKFSF LSSNDMHTLR KMSVRSKRIA DTVEALIGAY LGAAGEQAAF
1201: VFLKSLGLDI GFHSTIPLER KIVLKSEKFI NVRSLEMILG YEFKDTSLLV EALTHGSYQT AGTTACYQRL EFLGDAVLDH LFTIYFYNKY PECTPELLTD
1301: LRSASVNNNC YAHAAAKAGL NKHILHSSLP LHGRMAYYFE NFTKHRFTGP SHGWEAGIGL PKVLGDVIES LAGAIYLDSK YDKEVVWRSM KKLLEPLATP
1401: ETVERDPVKL LQEFCDRRSY SRSYTKVQKD GVSSVVGEVQ VEGTTYSATG TGPDKVVAKK LAAKLLLEDL KAIVP
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.