Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 2
- plasma membrane 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G03300.1 | KRH52961 | AT1G09700.1 | 15821876 |
| AT3G03300.1 | KRH62246 | AT1G09700.1 | 15821876 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 6.85 | 37.76 |
| Zm00001d013797_P006 | Maize | nucleus | 33.38 | 35.78 |
| KXG38096 | Sorghum | plastid | 33.25 | 33.68 |
| PGSC0003DMT400042918 | Potato | nucleus | 43.65 | 31.16 |
| VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 47.59 | 26.88 |
| KRH36818 | Soybean | cytosol, nucleus, plastid | 46.45 | 25.88 |
| Bra031999.1-P | Field mustard | nucleus | 41.62 | 25.69 |
| Solyc11g008540.1.1 | Tomato | mitochondrion | 43.53 | 25.37 |
| KRH36816 | Soybean | cytosol | 45.56 | 25.26 |
| Solyc11g008530.1.1 | Tomato | mitochondrion | 41.62 | 24.91 |
| Solyc06g048960.2.1 | Tomato | vacuole | 43.27 | 24.37 |
| AT3G03300.1 | Thale cress | nucleus | 41.88 | 23.78 |
| CDY43132 | Canola | cytosol, nucleus, plastid | 41.62 | 23.63 |
| CDY50692 | Canola | nucleus | 41.24 | 23.4 |
| Solyc11g008520.1.1 | Tomato | nucleus | 42.39 | 23.39 |
| KRH14361 | Soybean | cytosol | 9.01 | 20.58 |
| KRH11802 | Soybean | cytosol | 7.36 | 20.35 |
| OQU91441 | Sorghum | nucleus | 35.15 | 19.99 |
| TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 34.01 | 19.84 |
| Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 36.55 | 19.66 |
| Os03t0583900-01 | Rice | nucleus | 34.52 | 19.29 |
| TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 34.14 | 19.23 |
| KRH52276 | Soybean | cytosol | 12.18 | 19.09 |
| TraesCS5D01G086900.1 | Wheat | cytosol | 33.76 | 18.99 |
| HORVU5Hr1G019300.8 | Barley | plastid | 34.52 | 18.44 |
| KRH20103 | Soybean | nucleus | 25.89 | 12.46 |
| KRH03544 | Soybean | nucleus | 25.63 | 12.35 |
| KRH61605 | Soybean | nucleus | 25.76 | 12.13 |
| KRG97266 | Soybean | cytosol, nucleus, plastid | 26.02 | 10.54 |
| KRH68982 | Soybean | cytosol, nucleus, plastid | 25.89 | 10.48 |
Protein Annotations
| Gene3D:1.10.1520.10 | EntrezGene:100796706 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | MapMan:35.1 | EMBL:ACUP02012179 |
| EnsemblPlantsGene:GLYMA_19G254900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016442 | GO:GO:0016787 | GO:GO:0030422 |
| GO:GO:0031047 | GO:GO:0040029 | GO:GO:0090501 | GO:GO:0090502 | UniProt:I1NCK3 | InterPro:IPR000999 |
| InterPro:IPR003100 | InterPro:IPR014720 | InterPro:IPR036389 | EnsemblPlants:KRG97157 | ProteinID:KRG97157 | ProteinID:KRG97157.1 |
| InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00035 | PFAM:PF00636 | PFAM:PF02170 | ScanProsite:PS00517 |
| PFscan:PS50137 | PFscan:PS50142 | PFscan:PS50821 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | InterPro:RNase_III_dom |
| InterPro:RNase_III_sf | SMART:SM00358 | SMART:SM00535 | SUPFAM:SSF101690 | SUPFAM:SSF54768 | SUPFAM:SSF69065 |
| TMHMM:TMhelix | UniParc:UPI00023DD18E | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr19:+:49960082..49966827
Molecular Weight (calculated)
89783.1 Da
IEP (calculated)
7.948
GRAVY (calculated)
-0.253
Length
788 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGFGNAYPS YVPSELVSCS SKGRNVTYHC YLMELEQHYE YQVSVNDIVL AIRSELDSEI VDTLSGTSFD VKRGKLLVNL RHLEPIQLSP EKVQSCRRFQ
101: TTLFRILLNR DVTKLTSVSD DFSLGDNPEI DFLLLPATVK HQRPSNSIID WKPVLSVPFS SESTCDCKDH ACNVRIRNDS VCSCKLENCV VYTPHNGSIY
201: IIYTTDGTKK LNGNSTLNQG LKGITTYKEH FKKRHGIELG FEHQSLLHGR NLFKVENYLL KTRQKTEKGK NMSSVDLPPE VCSVIMSPIS IGTIYSFSFI
301: PSIMHWLEGL LVAFNLKRML LDHFTPNDIP ISKVLQAITA KGCEEAYDYD YLETLGDSYL KYIVSQQLFK TNQNDREGAL SDKRKNIISN DVLFKYGCTR
401: PLPGFIRKDK FDPKQWDVPG DKSNSILLLK QKLDSSRTRV YVRKTREIDL GIIADVVEAL IGAFISTEDE KAALSFINWI GINVDTNIMP YENERHISII
501: APEELVKAKL LKSRLNYSFK DPYLLVEALT HSSGKRPEIR TCYERLEFLG DAVLDYVITM HFYKEYSNDK FSAEFFTNMR SISVNNECYA LSAIKAKLDE
601: HILCDSVVKN NIAQTMEGVK NLSLESTFGW ELETYFCQVL ADVIESIAGA IFVDSGYKKE VVFQSIKPLL EPLVTPETAR RHPISELHEL CQKKGYKMKV
701: YPPVRVNGET SVTIEVKTNG ITYKNNPPAK ASNNDTARKL AAKDVLKQIK VTESKLLMNR RRFLFSLLSA VFLFCWCVDE IIYHVTRK
101: TTLFRILLNR DVTKLTSVSD DFSLGDNPEI DFLLLPATVK HQRPSNSIID WKPVLSVPFS SESTCDCKDH ACNVRIRNDS VCSCKLENCV VYTPHNGSIY
201: IIYTTDGTKK LNGNSTLNQG LKGITTYKEH FKKRHGIELG FEHQSLLHGR NLFKVENYLL KTRQKTEKGK NMSSVDLPPE VCSVIMSPIS IGTIYSFSFI
301: PSIMHWLEGL LVAFNLKRML LDHFTPNDIP ISKVLQAITA KGCEEAYDYD YLETLGDSYL KYIVSQQLFK TNQNDREGAL SDKRKNIISN DVLFKYGCTR
401: PLPGFIRKDK FDPKQWDVPG DKSNSILLLK QKLDSSRTRV YVRKTREIDL GIIADVVEAL IGAFISTEDE KAALSFINWI GINVDTNIMP YENERHISII
501: APEELVKAKL LKSRLNYSFK DPYLLVEALT HSSGKRPEIR TCYERLEFLG DAVLDYVITM HFYKEYSNDK FSAEFFTNMR SISVNNECYA LSAIKAKLDE
601: HILCDSVVKN NIAQTMEGVK NLSLESTFGW ELETYFCQVL ADVIESIAGA IFVDSGYKKE VVFQSIKPLL EPLVTPETAR RHPISELHEL CQKKGYKMKV
701: YPPVRVNGET SVTIEVKTNG ITYKNNPPAK ASNNDTARKL AAKDVLKQIK VTESKLLMNR RRFLFSLLSA VFLFCWCVDE IIYHVTRK
0001: MVMEDEPREA TIKPSYWLDA CEDISCDLID DLVSEFDPSS VAVNESTDEN GVINDFFGGI DHILDSIKNG GGLPNNGVSD TNSQINEVTV TPQVIAKETV
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VVLSMSMDLY VARAMITKAS LAFKGSLDIT ENQLSSLKKF HVRLMSIVLD VDVEPSTTPW DPAKAYLFVP VTDNTSMEPI
1101: KGINWELVEK ITKTTAWDNP LQRARPDVYL GTNERTLGGD RREYGFGKLR HNIVFGQKSH PTYGIRGAVA SFDVVRASGL LPVRDAFEKE VEEDLSKGKL
1201: MMADGCMVAE DLIGKIVTAA HSGKRFYVDS ICYDMSAETS FPRKEGYLGP LEYNTYADYY KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET
1301: VLDKTYYVFL PPELCVVHPL SGSLIRGAQR LPSIMRRVES MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL LGDAYLKWVV SRFLFLKYPQ
1401: KHEGQLTRMR QQMVSNMVLY QFALVKGLQS YIQADRFAPS RWSAPGVPPV FDEDTKDGGS SFFDEEQKPV SEENSDVFED GEMEDGELEG DLSSYRVLSS
1501: KTLADVVEAL IGVYYVEGGK IAANHLMKWI GIHVEDDPDE VDGTLKNVNV PESVLKSIDF VGLERALKYE FKEKGLLVEA ITHASRPSSG VSCYQRLEFV
1601: GDAVLDHLIT RHLFFTYTSL PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK QIREFVKEVQ TESSKPGFNS FGLGDCKAPK VLGDIVESIA
1701: GAIFLDSGKD TTAAWKVFQP LLQPMVTPET LPMHPVRELQ ERCQQQAEGL EYKASRSGNT ATVEVFIDGV QVGVAQNPQK KMAQKLAARN ALAALKEKEI
1801: AESKEKHINN GNAGEDQGEN ENGNKKNGHQ PFTRQTLNDI CLRKNWPMPS YRCVKEGGPA HAKRFTFGVR VNTSDRGWTD ECIGEPMPSV KKAKDSAAVL
1901: LLELLNKTFS
0101: KENGLQKNGG KRDEFSKEEG DKDRKRARVC SYQSERSNLS GRGHVNNSRE GDRFMNRKRT RNWDEAGNNK KKRECNNYRR DGRDREVRGY WERDKVGSNE
0201: LVYRSGTWEA DHERDVKKVS GGNRECDVKA EENKSKPEER KEKVVEEQAR RYQLDVLEQA KAKNTIAFLE TGAGKTLIAI LLIKSVHKDL MSQNRKMLSV
0301: FLVPKVPLVY QQAEVIRNQT CFQVGHYCGE MGQDFWDSRR WQREFESKQV LVMTAQILLN ILRHSIIRME TIDLLILDEC HHAVKKHPYS LVMSEFYHTT
0401: PKDKRPAIFG MTASPVNLKG VSSQVDCAIK IRNLETKLDS TVCTIKDRKE LEKHVPMPSE IVVEYDKAAT MWSLHETIKQ MIAAVEEAAQ ASSRKSKWQF
0501: MGARDAGAKD ELRQVYGVSE RTESDGAANL IHKLRAINYT LAELGQWCAY KVGQSFLSAL QSDERVNFQV DVKFQESYLS EVVSLLQCEL LEGAAAEKVA
0601: AEVGKPENGN AHDEMEEGEL PDDPVVSGGE HVDEVIGAAV ADGKVTPKVQ SLIKLLLKYQ HTADFRAIVF VERVVAALVL PKVFAELPSL SFIRCASMIG
0701: HNNSQEMKSS QMQDTISKFR DGHVTLLVAT SVAEEGLDIR QCNVVMRFDL AKTVLAYIQS RGRARKPGSD YILMVERGNV SHAAFLRNAR NSEETLRKEA
0801: IERTDLSHLK DTSRLISIDA VPGTVYKVEA TGAMVSLNSA VGLVHFYCSQ LPGDRYAILR PEFSMEKHEK PGGHTEYSCR LQLPCNAPFE ILEGPVCSSM
0901: RLAQQAVCLA ACKKLHEMGA FTDMLLPDKG SGQDAEKADQ DDEGEPVPGT ARHREFYPEG VADVLKGEWV SSGKEVCESS KLFHLYMYNV RCVDFGSSKD
1001: PFLSEVSEFA ILFGNELDAE VVLSMSMDLY VARAMITKAS LAFKGSLDIT ENQLSSLKKF HVRLMSIVLD VDVEPSTTPW DPAKAYLFVP VTDNTSMEPI
1101: KGINWELVEK ITKTTAWDNP LQRARPDVYL GTNERTLGGD RREYGFGKLR HNIVFGQKSH PTYGIRGAVA SFDVVRASGL LPVRDAFEKE VEEDLSKGKL
1201: MMADGCMVAE DLIGKIVTAA HSGKRFYVDS ICYDMSAETS FPRKEGYLGP LEYNTYADYY KQKYGVDLNC KQQPLIKGRG VSYCKNLLSP RFEQSGESET
1301: VLDKTYYVFL PPELCVVHPL SGSLIRGAQR LPSIMRRVES MLLAVQLKNL ISYPIPTSKI LEALTAASCQ ETFCYERAEL LGDAYLKWVV SRFLFLKYPQ
1401: KHEGQLTRMR QQMVSNMVLY QFALVKGLQS YIQADRFAPS RWSAPGVPPV FDEDTKDGGS SFFDEEQKPV SEENSDVFED GEMEDGELEG DLSSYRVLSS
1501: KTLADVVEAL IGVYYVEGGK IAANHLMKWI GIHVEDDPDE VDGTLKNVNV PESVLKSIDF VGLERALKYE FKEKGLLVEA ITHASRPSSG VSCYQRLEFV
1601: GDAVLDHLIT RHLFFTYTSL PPGRLTDLRA AAVNNENFAR VAVKHKLHLY LRHGSSALEK QIREFVKEVQ TESSKPGFNS FGLGDCKAPK VLGDIVESIA
1701: GAIFLDSGKD TTAAWKVFQP LLQPMVTPET LPMHPVRELQ ERCQQQAEGL EYKASRSGNT ATVEVFIDGV QVGVAQNPQK KMAQKLAARN ALAALKEKEI
1801: AESKEKHINN GNAGEDQGEN ENGNKKNGHQ PFTRQTLNDI CLRKNWPMPS YRCVKEGGPA HAKRFTFGVR VNTSDRGWTD ECIGEPMPSV KKAKDSAAVL
1901: LLELLNKTFS
Arabidopsis Description
DCL1Dicer-like 1 [Source:UniProtKB/TrEMBL;Acc:F4HQG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.