Skip to main content
crop-pal logo
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400024215

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G03300.1 PGSC0003DMT400024215 AT1G09700.1 15821876
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g048960.2.1 Tomato vacuole 96.29 75.98
VIT_04s0023g00920.t01 Wine grape cytosol, nucleus, plastid 59.6 47.17
KRG97157 Soybean cytosol, nucleus, plasma membrane 31.16 43.65
Bra031999.1-P Field mustard nucleus 49.55 42.83
KRH36818 Soybean cytosol, nucleus, plastid 53.99 42.15
AT3G03300.1 Thale cress nucleus 52.81 42.0
KRH36816 Soybean cytosol 53.8 41.8
CDY43132 Canola cytosol, nucleus, plastid 51.9 41.28
CDY50692 Canola nucleus 51.54 40.96
Zm00001d013797_P006 Maize nucleus 25.63 38.5
Os09t0315050-00 Rice cytosol, extracellular, nucleus 4.89 37.76
PGSC0003DMT400019213 Potato cytosol, peroxisome, vacuole 13.59 37.13
KXG38096 Sorghum plastid 26.09 37.02
Os03t0583900-01 Rice nucleus 45.02 35.25
OQU91441 Sorghum nucleus 44.2 35.21
TraesCS5B01G079900.1 Wheat cytosol, mitochondrion, nucleus, plastid 42.57 34.79
TraesCS5D01G086900.1 Wheat cytosol 43.93 34.62
TraesCS5A01G073600.1 Wheat cytosol, nucleus, plastid 43.75 34.52
Zm00001d013796_P005 Maize cytosol, endoplasmic reticulum, nucleus 44.29 33.38
HORVU5Hr1G019300.8 Barley plastid 43.12 32.27
PGSC0003DMT400086351 Potato cytosol 5.53 30.05
PGSC0003DMT400001808 Potato cytosol 6.34 27.89
PGSC0003DMT400037378 Potato cytosol 7.43 27.7
PGSC0003DMT400001805 Potato mitochondrion 7.25 27.3
PGSC0003DMT400053499 Potato mitochondrion 6.61 25.09
PGSC0003DMT400033487 Potato cytosol 7.88 23.71
KRH11802 Soybean cytosol 5.62 21.75
PGSC0003DMT400029301 Potato nucleus 30.71 17.71
Protein Annotations
Gene3D:1.10.1520.10Gene3D:2.170.260.10Gene3D:3.30.160.20Gene3D:3.30.160.380Gene3D:3.40.50.300MapMan:35.1
InterPro:Dicer_dimer_sfInterPro:Dicer_dimerisation_domGO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824
GO:GO:0004518GO:GO:0004525GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006259
GO:GO:0006396GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009605GO:GO:0009607
GO:GO:0009987GO:GO:0010216GO:GO:0010267GO:GO:0016787GO:GO:0016891GO:GO:0031047
GO:GO:0040029GO:GO:0051214GO:GO:0090501GO:GO:0090502InterPro:Helicase_CInterPro:IPR000999
InterPro:IPR001650InterPro:IPR003100InterPro:IPR005034InterPro:IPR036389InterPro:IPR038248UniProt:M1BDS7
InterPro:P-loop_NTPaseInterPro:PAZ_domInterPro:PAZ_dom_sfPFAM:PF00271PFAM:PF00636PFAM:PF02170
PFAM:PF03368EnsemblPlantsGene:PGSC0003DMG400016641PGSC:PGSC0003DMG400016641EnsemblPlants:PGSC0003DMT400042918ScanProsite:PS00517PFscan:PS50142
PFscan:PS50821PFscan:PS51194PFscan:PS51327PANTHER:PTHR14950PANTHER:PTHR14950:SF19InterPro:RNase_III_dom
InterPro:RNase_III_sfSMART:SM00490SMART:SM00535SMART:SM00949SUPFAM:SSF101690SUPFAM:SSF52540
SUPFAM:SSF54768SUPFAM:SSF69065UniParc:UPI000296798BSEG:seg::
Description
ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016641]
Coordinates
chr6:+:34131149..34139247
Molecular Weight (calculated)
124451.0 Da
IEP (calculated)
6.629
GRAVY (calculated)
-0.129
Length
1104 amino acids
Sequence
(BLAST)
0001: MGAWLAFKAT EFLSREEVDF FSWGELDVCA QTIVRDFSLG ASKIFSARLP SGPHWSIGGD IQANADAGYL SSKVTCLLES LLEYRDQKDL RCIIFVERII
0101: TAIVLRSLLN ELLPELCGWR TEYTAGHISV VQSQSRKLQN KIVEEFRKGL VNIIVATSIL EEGLDVQSCN LVIRFDPSAT VCSFIQSRGR ARMQNSDFLL
0201: MVRSGDDSTL TRMHNYMASG EIMRQESLRH ASIPCSPLDD ELYDEPCYKV ESTGAIVTLS SSVSLLYLYC SRLPSDGYFK PNPRCVIDKE TGTCTLQLPK
0301: SCPLQRIISV QGNNKISKQL ACLDACKELH RMGALTDNLV PDIMEEETIN KESECQIHTV EELKYFPPEL VSHCGNDSEA LYYCYLVELQ HDFYNDFQLH
0401: GIILAVRTRL KFDDEIMAFD LDVDRRGRLQ VQLNYHKVVA LTSEEIQRCR RFQSSVFRIL LDRDLSKLQD ALAAVQLPIG SAVSDYLLLP SLGTTPEINW
0501: KCVNSLLFPS QVLGDKHMDC CSTQGCKRSV STKTGVVCSC MLENSLVFTP HNGHIYCITG FLDNLDCNSL LDMRTGEPIT YIKYYKKRHG INICFEEEPL
0601: LRGKHICKVH NYLQRCRTQK AKDSTDSSVE LPPELCSLIM SPVSISTLNT YSYVPSIMHR IESLVMASNL KRMHLDHCTL NIFIPTVKVL EAMTTKKCLE
0701: KFHLESLETL GDSFLKYAAS IQLFKTYENH HEGLLTVKKN KIISNDALCR LGCARKIPGF IRNEPFDLKA WLIPGDNSQI HTFDEEFLTS SDKMYSREKQ
0801: KFKSKRVADV VEALIGAYLS SGGEVAALSF MKWLGVDIDF VDAPLPRHFP MNAEKLINVR YLESLLHYKF NDPSLLVEAL THGSYMLPEI PRCYQRLEFL
0901: GDAVLDYVVT AHLYFKYPGL TPGLITDLRS ASVNNECYAQ SAVKAGLHKH ILHASQDLQR QILGTVEDFE KLDLLSTFGW EAETTFPKVL GDVIESLGGA
1001: IFVDSGFNKD TTFQSIRPLL EPLVTPQTVK LQPVRELSEL CDQKGYIKKK DVVSRENGVA YITVEVEANG VIHKSTCSGR DKIMAKKVAS KNVLKSLKEC
1101: PSNA
Best Arabidopsis Sequence Match ( AT3G03300.3 )
(BLAST)
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.