Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400024215 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G03300.1 | PGSC0003DMT400024215 | AT1G09700.1 | 15821876 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc06g048960.2.1 | Tomato | vacuole | 96.29 | 75.98 |
VIT_04s0023g00920.t01 | Wine grape | cytosol, nucleus, plastid | 59.6 | 47.17 |
KRG97157 | Soybean | cytosol, nucleus, plasma membrane | 31.16 | 43.65 |
Bra031999.1-P | Field mustard | nucleus | 49.55 | 42.83 |
KRH36818 | Soybean | cytosol, nucleus, plastid | 53.99 | 42.15 |
AT3G03300.1 | Thale cress | nucleus | 52.81 | 42.0 |
KRH36816 | Soybean | cytosol | 53.8 | 41.8 |
CDY43132 | Canola | cytosol, nucleus, plastid | 51.9 | 41.28 |
CDY50692 | Canola | nucleus | 51.54 | 40.96 |
Zm00001d013797_P006 | Maize | nucleus | 25.63 | 38.5 |
Os09t0315050-00 | Rice | cytosol, extracellular, nucleus | 4.89 | 37.76 |
PGSC0003DMT400019213 | Potato | cytosol, peroxisome, vacuole | 13.59 | 37.13 |
KXG38096 | Sorghum | plastid | 26.09 | 37.02 |
Os03t0583900-01 | Rice | nucleus | 45.02 | 35.25 |
OQU91441 | Sorghum | nucleus | 44.2 | 35.21 |
TraesCS5B01G079900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 42.57 | 34.79 |
TraesCS5D01G086900.1 | Wheat | cytosol | 43.93 | 34.62 |
TraesCS5A01G073600.1 | Wheat | cytosol, nucleus, plastid | 43.75 | 34.52 |
Zm00001d013796_P005 | Maize | cytosol, endoplasmic reticulum, nucleus | 44.29 | 33.38 |
HORVU5Hr1G019300.8 | Barley | plastid | 43.12 | 32.27 |
PGSC0003DMT400086351 | Potato | cytosol | 5.53 | 30.05 |
PGSC0003DMT400001808 | Potato | cytosol | 6.34 | 27.89 |
PGSC0003DMT400037378 | Potato | cytosol | 7.43 | 27.7 |
PGSC0003DMT400001805 | Potato | mitochondrion | 7.25 | 27.3 |
PGSC0003DMT400053499 | Potato | mitochondrion | 6.61 | 25.09 |
PGSC0003DMT400033487 | Potato | cytosol | 7.88 | 23.71 |
KRH11802 | Soybean | cytosol | 5.62 | 21.75 |
PGSC0003DMT400029301 | Potato | nucleus | 30.71 | 17.71 |
Protein Annotations
Gene3D:1.10.1520.10 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 | Gene3D:3.40.50.300 | MapMan:35.1 |
InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
GO:GO:0004518 | GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006259 |
GO:GO:0006396 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 |
GO:GO:0009987 | GO:GO:0010216 | GO:GO:0010267 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0031047 |
GO:GO:0040029 | GO:GO:0051214 | GO:GO:0090501 | GO:GO:0090502 | InterPro:Helicase_C | InterPro:IPR000999 |
InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR036389 | InterPro:IPR038248 | UniProt:M1BDS7 |
InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 |
PFAM:PF03368 | EnsemblPlantsGene:PGSC0003DMG400016641 | PGSC:PGSC0003DMG400016641 | EnsemblPlants:PGSC0003DMT400042918 | ScanProsite:PS00517 | PFscan:PS50142 |
PFscan:PS50821 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 | PANTHER:PTHR14950:SF19 | InterPro:RNase_III_dom |
InterPro:RNase_III_sf | SMART:SM00490 | SMART:SM00535 | SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 |
SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI000296798B | SEG:seg | : | : |
Description
ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016641]
Coordinates
chr6:+:34131149..34139247
Molecular Weight (calculated)
124451.0 Da
IEP (calculated)
6.629
GRAVY (calculated)
-0.129
Length
1104 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGAWLAFKAT EFLSREEVDF FSWGELDVCA QTIVRDFSLG ASKIFSARLP SGPHWSIGGD IQANADAGYL SSKVTCLLES LLEYRDQKDL RCIIFVERII
0101: TAIVLRSLLN ELLPELCGWR TEYTAGHISV VQSQSRKLQN KIVEEFRKGL VNIIVATSIL EEGLDVQSCN LVIRFDPSAT VCSFIQSRGR ARMQNSDFLL
0201: MVRSGDDSTL TRMHNYMASG EIMRQESLRH ASIPCSPLDD ELYDEPCYKV ESTGAIVTLS SSVSLLYLYC SRLPSDGYFK PNPRCVIDKE TGTCTLQLPK
0301: SCPLQRIISV QGNNKISKQL ACLDACKELH RMGALTDNLV PDIMEEETIN KESECQIHTV EELKYFPPEL VSHCGNDSEA LYYCYLVELQ HDFYNDFQLH
0401: GIILAVRTRL KFDDEIMAFD LDVDRRGRLQ VQLNYHKVVA LTSEEIQRCR RFQSSVFRIL LDRDLSKLQD ALAAVQLPIG SAVSDYLLLP SLGTTPEINW
0501: KCVNSLLFPS QVLGDKHMDC CSTQGCKRSV STKTGVVCSC MLENSLVFTP HNGHIYCITG FLDNLDCNSL LDMRTGEPIT YIKYYKKRHG INICFEEEPL
0601: LRGKHICKVH NYLQRCRTQK AKDSTDSSVE LPPELCSLIM SPVSISTLNT YSYVPSIMHR IESLVMASNL KRMHLDHCTL NIFIPTVKVL EAMTTKKCLE
0701: KFHLESLETL GDSFLKYAAS IQLFKTYENH HEGLLTVKKN KIISNDALCR LGCARKIPGF IRNEPFDLKA WLIPGDNSQI HTFDEEFLTS SDKMYSREKQ
0801: KFKSKRVADV VEALIGAYLS SGGEVAALSF MKWLGVDIDF VDAPLPRHFP MNAEKLINVR YLESLLHYKF NDPSLLVEAL THGSYMLPEI PRCYQRLEFL
0901: GDAVLDYVVT AHLYFKYPGL TPGLITDLRS ASVNNECYAQ SAVKAGLHKH ILHASQDLQR QILGTVEDFE KLDLLSTFGW EAETTFPKVL GDVIESLGGA
1001: IFVDSGFNKD TTFQSIRPLL EPLVTPQTVK LQPVRELSEL CDQKGYIKKK DVVSRENGVA YITVEVEANG VIHKSTCSGR DKIMAKKVAS KNVLKSLKEC
1101: PSNA
0101: TAIVLRSLLN ELLPELCGWR TEYTAGHISV VQSQSRKLQN KIVEEFRKGL VNIIVATSIL EEGLDVQSCN LVIRFDPSAT VCSFIQSRGR ARMQNSDFLL
0201: MVRSGDDSTL TRMHNYMASG EIMRQESLRH ASIPCSPLDD ELYDEPCYKV ESTGAIVTLS SSVSLLYLYC SRLPSDGYFK PNPRCVIDKE TGTCTLQLPK
0301: SCPLQRIISV QGNNKISKQL ACLDACKELH RMGALTDNLV PDIMEEETIN KESECQIHTV EELKYFPPEL VSHCGNDSEA LYYCYLVELQ HDFYNDFQLH
0401: GIILAVRTRL KFDDEIMAFD LDVDRRGRLQ VQLNYHKVVA LTSEEIQRCR RFQSSVFRIL LDRDLSKLQD ALAAVQLPIG SAVSDYLLLP SLGTTPEINW
0501: KCVNSLLFPS QVLGDKHMDC CSTQGCKRSV STKTGVVCSC MLENSLVFTP HNGHIYCITG FLDNLDCNSL LDMRTGEPIT YIKYYKKRHG INICFEEEPL
0601: LRGKHICKVH NYLQRCRTQK AKDSTDSSVE LPPELCSLIM SPVSISTLNT YSYVPSIMHR IESLVMASNL KRMHLDHCTL NIFIPTVKVL EAMTTKKCLE
0701: KFHLESLETL GDSFLKYAAS IQLFKTYENH HEGLLTVKKN KIISNDALCR LGCARKIPGF IRNEPFDLKA WLIPGDNSQI HTFDEEFLTS SDKMYSREKQ
0801: KFKSKRVADV VEALIGAYLS SGGEVAALSF MKWLGVDIDF VDAPLPRHFP MNAEKLINVR YLESLLHYKF NDPSLLVEAL THGSYMLPEI PRCYQRLEFL
0901: GDAVLDYVVT AHLYFKYPGL TPGLITDLRS ASVNNECYAQ SAVKAGLHKH ILHASQDLQR QILGTVEDFE KLDLLSTFGW EAETTFPKVL GDVIESLGGA
1001: IFVDSGFNKD TTFQSIRPLL EPLVTPQTVK LQPVRELSEL CDQKGYIKKK DVVSRENGVA YITVEVEANG VIHKSTCSGR DKIMAKKVAS KNVLKSLKEC
1101: PSNA
0001: MTMDADAMET ETTDQVSASP LHFARSYQVE ALEKAIKQNT IVFLETGSGK TLIAIMLLRS YAYLFRKPSP CFCVFLVPQV VLVTQQAEAL KMHTDLKVGM
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
0101: YWGDMGVDFW DSSTWKQEVD KYEVLVMTPA ILLDALRHSF LSLSMIKVLI VDECHHAGGK HPYACIMREF YHKELNSGTS NVPRIFGMTA SLVKTKGENL
0201: DSYWKKIHEL ETLMNSKVYT CENESVLAGF VPFSTPSFKY YQHIKIPSPK RASLVEKLER LTIKHRLSLG TLDLNSSTVD SVEKRLLRIS STLTYCLDDL
0301: GILLAQKAAQ SLSASQNDSF LWGELNMFSV ALVKKFCSDA SQEFLAEIPQ GLNWSVANIN GNAEAGLLTL KTVCLIETLL GYSSLENIRC IIFVDRVITA
0401: IVLESLLAEI LPNCNNWKTK YVAGNNSGLQ NQTRKKQNEI VEDFRRGLVN IIVATSILEE GLDVQSCNLV IRFDPASNIC SFIQSRGRAR MQNSDYLMMV
0501: ESGDLLTQSR LMKYLSGGKR MREESLDHSL VPCPPLPDDS DEPLFRVEST GATVTLSSSV SLIYHYCSRL PSDEYFKPAP RFDVNKDQGS CTLYLPKSCP
0601: VKEVKAEANN KVLKQAVCLK ACIQLHKVGA LSDHLVPDMV VAETVSQKLE KIQYNTEQPC YFPPELVSQF SAQPETTYHF YLIRMKPNSP RNFHLNDVLL
0701: GTRVVLEDDI GNTSFRLEDH RGTIAVTLSY VGAFHLTQEE VLFCRRFQIT LFRVLLDHSV ENLMEALNGL HLRDGVALDY LLVPSTHSHE TSLIDWEVIR
0801: SVNLTSHEVL EKHENCSTNG ASRILHTKDG LFCTCVVQNA LVYTPHNGYV YCTKGVLNNL NGNSLLTKRN SGDQTYIEYY EERHGIQLNF VDEPLLNGRH
0901: IFTLHSYLHM AKKKKEKEHD REFVELPPEL CHVILSPISV DMIYSYTFIP SVMQRIESLL IAYNLKKSIP KVNIPTIKVL EAITTKKCED QFHLESLETL
1001: GDSFLKYAVC QQLFQHCHTH HEGLLSTKKD GMISNVMLCQ FGCQQKLQGF IRDECFEPKG WMVPGQSSAA YSLVNDTLPE SRNIYVASRR NLKRKSVADV
1101: VESLIGAYLS EGGELAALMF MNWVGIKVDF TTTKIQRDSP IQAEKLVNVG YMESLLNYSF EDKSLLVEAL THGSYMMPEI PRCYQRLEFL GDSVLDYLIT
1201: KHLYDKYPCL SPGLLTDMRS ASVNNECYAL VAVKANLHKH ILYASHHLHK HISRTVSEFE QSSLQSTFGW ESDISFPKVL GDVIESLAGA IFVDSGYNKE
1301: VVFASIKPLL GCMITPETVK LHPVRELTEL CQKWQFELSK AKDFDSFTVE VKAKEMSFAH TAKASDKKMA KKLAYKEVLN LLKNSLDY
Arabidopsis Description
DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.