Factsheet for PGSC0003DMT400033487

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400023896
PGSC0003DMT400033487
PGSC0003DMT400069203
PGSC0003DMT400088401

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	PGSC0003DMT400088401	AT1G54060.1	21798944
AT3G20420.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT3G20420.1	PGSC0003DMT400069203	AT1G71230.1	21798944
AT3G20420.1	PGSC0003DMT400033487	AT3G20420.1	21798944
AT3G20420.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	91.83	86.19
VIT_19s0090g00940.t01	Wine grape	cytosol	58.04	63.2
KRH14361	Soybean	cytosol	53.41	56.81
PGSC0003DMT400037378	Potato	cytosol	44.69	55.41
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	46.87	50.44
Bra035784.1-P	Field mustard	cytosol	45.78	50.15
CDY54644	Canola	cytosol	45.78	50.15
Os05t0271300-00	Rice	cytosol, nucleus, plastid	41.14	47.63
Zm00001d009879_P002	Maize	plastid	48.23	47.07
GSMUA_Achr2P15170_001	Banana	cytosol	43.05	46.47
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	46.59	46.09
TraesCS7A01G513500.1	Wheat	nucleus	39.78	46.06
TraesCS7A01G512700.1	Wheat	mitochondrion	45.23	45.73
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	46.32	45.7
TraesCS7D01G504300.3	Wheat	mitochondrion	46.05	45.68
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	45.78	45.65
CDY29825	Canola	plastid	46.59	45.6
AT3G20420.1	Thale cress	plastid	48.23	45.27
TraesCS7B01G430900.2	Wheat	mitochondrion	45.5	44.65
TraesCSU01G086900.1	Wheat	mitochondrion	44.41	43.94
TraesCS7B01G428200.1	Wheat	mitochondrion	43.05	43.29
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	47.68	43.0
HORVU7Hr1G115000.1	Barley	nucleus	20.98	40.96
HORVU7Hr1G115100.2	Barley	plastid	45.23	40.69
KXG21693	Sorghum	plastid	47.41	39.37
Os01t0551100-01	Rice	cytosol	25.89	37.11
PGSC0003DMT400001808	Potato	cytosol	25.34	37.05
PGSC0003DMT400086351	Potato	cytosol	20.16	36.45
PGSC0003DMT400053499	Potato	mitochondrion	26.43	33.33
PGSC0003DMT400001805	Potato	mitochondrion	25.34	31.74
AT5G45150.1	Thale cress	cytosol	31.88	12.23
PGSC0003DMT400042918	Potato	nucleus	23.71	7.88
PGSC0003DMT400029301	Potato	nucleus	34.06	6.53
PGSC0003DMT400019213	Potato	cytosol, peroxisome, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.12	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	GO:GO:0090502
InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	UniProt:M1AZ89	PFAM:PF00035	PFAM:PF00636
PFAM:PF14709	EnsemblPlantsGene:PGSC0003DMG400012864	PGSC:PGSC0003DMG400012864	EnsemblPlants:PGSC0003DMT400033487	ScanProsite:PS00517	PFscan:PS50137
PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358
SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	UniParc:UPI000295B598	InterPro:dsRBD_dom	SEG:seg

Description

Ribonuclease III [Source:PGSC_GENE;Acc:PGSC0003DMG400012864]

Coordinates

chr12:+:9355442..9358114

Molecular Weight (calculated)

40743.0 Da

IEP (calculated)

6.194

GRAVY (calculated)

-0.218

Length

367 amino acids

Sequence
(BLAST)

001: MMQSPESCVT LTNPTNKSVV LIPDDDDEID IITDMAASIR AVEEILNYKF KNEKLLEQAL THSSCTDSPS YQRLEFVGDA ALGLAISNFV YLTYPELDPG
101: QLSLLRSANV STEKLARVAV KHSLYKFVRH NTTSLDQKVK EFVIAVEQEE QAELHGGAMK APKVLADIVE SVAAAVYVDC HFDLKALWKI INGLLEPIIT
201: LDLLAQQPQP VTMLYELCQK EGKHVDIKHW RKEEKDIASV YVDGQFVVSA TSENKENAKL HAAKAALTKL AYKHTSKLDL EVEPNTEFGG AKQKLNELCG
301: RKKWPAPTYR IEKQVGPSHD RRFICSVQVA VAKGVVFVMG EEKMRVKDAE NSAASAMIWG LQGSNLG

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.