Factsheet for HORVU7Hr1G115000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G077940.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G113750.1
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU6Hr1G023630.1
HORVU6Hr1G050140.1
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1
HORVU7Hr1G078010.1
HORVU7Hr1G115000.1
HORVU7Hr1G115100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	HORVU2Hr1G077940.1	AT1G54060.1	21798944
AT3G20420.1	HORVU6Hr1G050140.1	AT1G54060.1	21798944
AT3G20420.1	HORVU0Hr1G018470.1	AT1G71230.1	21798944
AT3G20420.1	HORVU0Hr1G025410.1	AT1G71230.1	21798944
AT3G20420.1	HORVU1Hr1G008160.1	AT1G71230.1	21798944
AT3G20420.1	HORVU2Hr1G056160.5	AT1G71230.1	21798944
AT3G20420.1	HORVU2Hr1G067660.1	AT1G71230.1	21798944
AT3G20420.1	HORVU2Hr1G112000.1	AT1G71230.1	21798944
AT3G20420.1	HORVU3Hr1G021300.1	AT1G71230.1	21798944
AT3G20420.1	HORVU3Hr1G054660.1	AT1G71230.1	21798944
AT3G20420.1	HORVU3Hr1G113750.1	AT1G71230.1	21798944
AT3G20420.1	HORVU4Hr1G047410.2	AT1G71230.1	21798944
AT3G20420.1	HORVU4Hr1G048730.1	AT1G71230.1	21798944
AT3G20420.1	HORVU6Hr1G023630.1	AT1G71230.1	21798944
AT3G20420.1	HORVU7Hr1G078010.1	AT1G71230.1	21798944
AT3G20420.1	HORVU7Hr1G115000.1	AT3G20420.1	21798944
AT3G20420.1	HORVU7Hr1G115100.2	AT3G20420.1	21798944
AT3G20420.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT3G20420.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G513500.1	Wheat	nucleus	88.3	52.37
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	88.83	45.38
Os05t0271300-00	Rice	cytosol, nucleus, plastid	76.06	45.11
HORVU7Hr1G115100.2	Barley	plastid	97.87	45.1
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	88.83	44.89
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	87.77	44.47
TraesCS7B01G430900.2	Wheat	mitochondrion	87.77	44.12
TraesCSU01G086900.1	Wheat	mitochondrion	86.7	43.94
TraesCS7D01G504300.3	Wheat	mitochondrion	86.17	43.78
Zm00001d009879_P002	Maize	plastid	74.47	37.23
KXG21693	Sorghum	plastid	72.87	31.0
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	51.06	28.15
VIT_19s0090g00940.t01	Wine grape	cytosol	43.62	24.33
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	52.13	24.08
GSMUA_Achr2P15170_001	Banana	cytosol	40.96	22.65
KRH14361	Soybean	cytosol	39.36	21.45
PGSC0003DMT400033487	Potato	cytosol	40.96	20.98
CDY54644	Canola	cytosol	36.17	20.3
Bra035784.1-P	Field mustard	cytosol	36.17	20.3
PGSC0003DMT400037378	Potato	cytosol	30.32	19.26
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	39.36	18.93
AT3G20420.1	Thale cress	plastid	38.3	18.41
CDY29825	Canola	plastid	35.64	17.87
HORVU7Hr1G082860.4	Barley	plastid	28.72	15.04
AT5G45150.1	Thale cress	cytosol	28.72	5.64
HORVU3Hr1G092430.9	Barley	cytosol, nucleus, plastid	26.6	2.97
HORVU2Hr1G088270.9	Barley	endoplasmic reticulum	25.0	2.87
HORVU4Hr1G084890.7	Barley	cytosol, nucleus, plastid	29.26	2.75
HORVU1Hr1G042710.5	Barley	cytosol, mitochondrion, nucleus	24.47	2.73
HORVU5Hr1G019300.8	Barley	plastid	19.68	2.51
Solyc10g006210.1.1	Tomato	cytosol	0.53	0.93

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A287XVT1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501
GO:GO:0090502	EnsemblPlantsGene:HORVU7Hr1G115000	EnsemblPlants:HORVU7Hr1G115000.1	InterPro:IPR014720	InterPro:IPR036389	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_sf	SMART:SM00358	SUPFAM:SSF54768
SUPFAM:SSF69065	UniParc:UPI000B46B474	InterPro:dsRBD_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr7H:+:640639724..640641119

Molecular Weight (calculated)

20579.1 Da

IEP (calculated)

6.923

GRAVY (calculated)

-0.035

Length

188 amino acids

Sequence
(BLAST)

001: MLKLELVGQF IESVKQELED DLGITPYGGS VFKAPKVLAD IVEAIAAAVY VDCKFNIEEL WKVTRFLFEP IVTAETIDEQ PVSTLHELCQ KHGKDIKFKS
101: WQKGGTTVVN VFVGGVLVGT GSSEQMGIAK LNATRDALSK LHGGGNQQVL TTGVGHGLGV EVGELRECKK KLIDQCNRKL WPKPIFNL

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.