Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G158000.2 | Wheat | nucleus | 92.75 | 95.88 |
| TraesCS1A01G160900.1 | Wheat | nucleus | 92.63 | 95.82 |
| TraesCS1B01G177600.1 | Wheat | nucleus | 58.88 | 95.66 |
| OQU91611 | Sorghum | nucleus, plastid | 78.25 | 80.45 |
| Os10t0485600-01 | Rice | cytosol, plastid | 77.9 | 80.09 |
| Zm00001d032655_P006 | Maize | nucleus | 73.38 | 78.66 |
| GSMUA_Achr5P10880_001 | Banana | cytosol | 50.15 | 52.82 |
| Solyc08g067210.2.1 | Tomato | nucleus | 39.51 | 46.5 |
| KRH61605 | Soybean | nucleus | 44.92 | 45.16 |
| HORVU3Hr1G092430.9 | Barley | cytosol, nucleus, plastid | 43.08 | 43.03 |
| KRH52276 | Soybean | cytosol | 12.6 | 42.15 |
| AT3G43920.2 | Thale cress | cytosol, nucleus, plastid | 37.55 | 40.0 |
| CDY30942 | Canola | nucleus | 29.65 | 39.57 |
| Bra019456.1-P | Field mustard | nucleus | 33.04 | 38.42 |
| VIT_04s0008g02170.t01 | Wine grape | mitochondrion | 43.85 | 37.98 |
| CDY21223 | Canola | nucleus | 34.17 | 37.56 |
| HORVU7Hr1G082860.4 | Barley | plastid | 6.42 | 30.08 |
| HORVU2Hr1G088270.9 | Barley | endoplasmic reticulum | 27.63 | 28.44 |
| HORVU5Hr1G019300.8 | Barley | plastid | 24.6 | 28.07 |
| HORVU4Hr1G084890.7 | Barley | cytosol, nucleus, plastid | 30.6 | 25.79 |
| HORVU7Hr1G115100.2 | Barley | plastid | 6.18 | 25.49 |
| HORVU7Hr1G115000.1 | Barley | nucleus | 2.73 | 24.47 |
Protein Annotations
| Gene3D:1.10.1520.10 | Gene3D:1.20.1320.30 | MapMan:12.5.1.8 | Gene3D:2.170.260.10 | Gene3D:3.30.160.20 | Gene3D:3.30.160.380 |
| Gene3D:3.40.50.300 | UniProt:A0A287FAX5 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:Dicer_dimer_sf | InterPro:Dicer_dimerisation_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004525 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016891 | GO:GO:0031047 |
| GO:GO:0090501 | GO:GO:0090502 | EnsemblPlantsGene:HORVU1Hr1G042710 | EnsemblPlants:HORVU1Hr1G042710.5 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR000999 | InterPro:IPR001650 | InterPro:IPR003100 | InterPro:IPR005034 | InterPro:IPR014001 | InterPro:IPR014720 |
| InterPro:IPR036389 | InterPro:IPR038248 | InterPro:P-loop_NTPase | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF00035 |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00636 | PFAM:PF02170 | PFAM:PF03368 | ScanProsite:PS00517 |
| PFscan:PS50142 | PFscan:PS50821 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51327 | PANTHER:PTHR14950 |
| PANTHER:PTHR14950:SF31 | InterPro:RNase_III_dom | InterPro:RNase_III_sf | SMART:SM00487 | SMART:SM00490 | SMART:SM00535 |
| SMART:SM00949 | SUPFAM:SSF101690 | SUPFAM:SSF52540 | SUPFAM:SSF54768 | SUPFAM:SSF69065 | UniParc:UPI000B4636CF |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:310007028..310025536
Molecular Weight (calculated)
189841.0 Da
IEP (calculated)
6.635
GRAVY (calculated)
-0.162
Length
1683 amino acids
Sequence
(BLAST)
(BLAST)
0001: QNLLSEPTNA AQPTPPLHAL RLLPSAQSPT PGADSYTLLA YRHALPPPPL ACTEPNPMVM AMADDDGPIP PPPPPPPPRR PHMQLQPRRY QVEVFEAALQ
0101: GNTIAVLDTG SGKTMVAVLL ARYHVSRARA GEAPRRIVVF LAPTVHLVHQ QFEVIREYTD LDVAECYGAS GVGDWSTDRW NKEVGSKEIA VMTPQILLDA
0201: LRHAFITMSA VSLLIFDECH RACGNHPYTR IMKEFYVGSE WRPAVFGMTA SPVATKGTST VQDCEAHIGQ LELTLDAKVY IIKDRSELES FSPPATIVNK
0301: YYDAYSIDFE DLKSKLQILY EEYDALLANL QESSPNKFED TNNILETSRK TLSRYHEKIF YGLNYLGPII TAEVVKIYNE SIKTLDDSED CLFSKASFSL
0401: HVAYFKEALD LIEAVLPHGY GELMKSESGT AELSKRGYIS SKVDALINIF KSFGSSNEVL CLIFVERIMT AKAVERFMRG IFNFSSFSIS YLTGGSTSKD
0501: SLSPAVQRYT LDLFRSGKVN LLFSTDVTEE GIDVPNCSCV IRFDLPRTVC SYVQSRGRAR RRSSNYVLMI ERGNMDQQEH IFRIIQTEYY IKHFALYRQE
0601: TPNVSSSELP MQDKYAYHVD STGATITADC CVDLIRKYCE KLPKDRYYMP KPSFVVAIED GSYQCTLTLP PNAAFQRIVG PLCSTSNLAK QLVSLDACKK
0701: LHQLGELNDH LLPLTEEPID IDVALRDGKF LSGPGTTKRK ELHGTRNVLA LSGSWIHESE SVTLNTYRFD FLCDQEGENY AGFVLLMESA LDDDVACSKM
0801: DLFLIPNKMV YTTITPCGKV QLDKKQLRDG KLFQELFFNG IFGRLFHGSR TSGVQREFLF RKGHEIQWSS ECMYLLLPLR HSPHIQQDLN IYWEAVESCT
0901: QVVEQLRNLY LEDENICANS IQHRSIKEKD IIHLANKSLH FSSIKDSVVL SLHTGRIYSV LDLIYDTTAE DSFEEMYNGK ASPFSSFVDY YREKYGIIIQ
1001: HPKQPLLLLK QSHNAHNLLF SKSKYIDGST GDPLLMEKEQ IHARVPPELL IHIDVTIEVL KSFYLLPSVM HRLQSLMLAS QLRRDIGYTQ HIPSYLILEA
1101: ITTLRCCETF SLERLELLGD SVLKYLIGCD LFLRYPMKHE GHLSDMRSNA VCNATLHKHG IWRSLQGYVR DSAFDPRRWV APGQISLRPF PCNCGIETAF
1201: VPTNGRYISD DPSFVVGKPC DRAHRWMCSK TISDCVEALV GAYYVGGGIV AALWVMKWFG IEIKCDRKLV QEVKLNASYI CYLPKVSVIE ELEAKLKYNF
1301: SVKGLLLEAI THPSLQELGV DYCYQRLEFL GDSVLDLLIT RYLYVTHTDV DPGELTDLRS ALVSNENFAE VVLRNNIHSH LQHGSGILLE QITEYVKSNL
1401: ECQGKVNKFL QHATCKVPKV LGDIMESIAG AIFVDTDFDV DVVWKIVEPL LSPMITPDNL ALPPYRELLE LCSHLGYFIN SKCSSRGEEV TIDMSVQLRD
1501: ELLIAQGHDR NKKSAKAKAA ARILADLKKR GLSMKQCSSK SKQLDIISPD LQYPLLESPL DYCDVNVNPS LGGLPSLKEA VVLQLKMDKG GPRSALFKLC
1601: KRLQWPMPEF EFVEQRFRTP IVLDGVTTTN FNSFVSTITL HIPDVTAITI QGKRQTDKKS SQDSASLIML HKLQELKVCI CKT
0101: GNTIAVLDTG SGKTMVAVLL ARYHVSRARA GEAPRRIVVF LAPTVHLVHQ QFEVIREYTD LDVAECYGAS GVGDWSTDRW NKEVGSKEIA VMTPQILLDA
0201: LRHAFITMSA VSLLIFDECH RACGNHPYTR IMKEFYVGSE WRPAVFGMTA SPVATKGTST VQDCEAHIGQ LELTLDAKVY IIKDRSELES FSPPATIVNK
0301: YYDAYSIDFE DLKSKLQILY EEYDALLANL QESSPNKFED TNNILETSRK TLSRYHEKIF YGLNYLGPII TAEVVKIYNE SIKTLDDSED CLFSKASFSL
0401: HVAYFKEALD LIEAVLPHGY GELMKSESGT AELSKRGYIS SKVDALINIF KSFGSSNEVL CLIFVERIMT AKAVERFMRG IFNFSSFSIS YLTGGSTSKD
0501: SLSPAVQRYT LDLFRSGKVN LLFSTDVTEE GIDVPNCSCV IRFDLPRTVC SYVQSRGRAR RRSSNYVLMI ERGNMDQQEH IFRIIQTEYY IKHFALYRQE
0601: TPNVSSSELP MQDKYAYHVD STGATITADC CVDLIRKYCE KLPKDRYYMP KPSFVVAIED GSYQCTLTLP PNAAFQRIVG PLCSTSNLAK QLVSLDACKK
0701: LHQLGELNDH LLPLTEEPID IDVALRDGKF LSGPGTTKRK ELHGTRNVLA LSGSWIHESE SVTLNTYRFD FLCDQEGENY AGFVLLMESA LDDDVACSKM
0801: DLFLIPNKMV YTTITPCGKV QLDKKQLRDG KLFQELFFNG IFGRLFHGSR TSGVQREFLF RKGHEIQWSS ECMYLLLPLR HSPHIQQDLN IYWEAVESCT
0901: QVVEQLRNLY LEDENICANS IQHRSIKEKD IIHLANKSLH FSSIKDSVVL SLHTGRIYSV LDLIYDTTAE DSFEEMYNGK ASPFSSFVDY YREKYGIIIQ
1001: HPKQPLLLLK QSHNAHNLLF SKSKYIDGST GDPLLMEKEQ IHARVPPELL IHIDVTIEVL KSFYLLPSVM HRLQSLMLAS QLRRDIGYTQ HIPSYLILEA
1101: ITTLRCCETF SLERLELLGD SVLKYLIGCD LFLRYPMKHE GHLSDMRSNA VCNATLHKHG IWRSLQGYVR DSAFDPRRWV APGQISLRPF PCNCGIETAF
1201: VPTNGRYISD DPSFVVGKPC DRAHRWMCSK TISDCVEALV GAYYVGGGIV AALWVMKWFG IEIKCDRKLV QEVKLNASYI CYLPKVSVIE ELEAKLKYNF
1301: SVKGLLLEAI THPSLQELGV DYCYQRLEFL GDSVLDLLIT RYLYVTHTDV DPGELTDLRS ALVSNENFAE VVLRNNIHSH LQHGSGILLE QITEYVKSNL
1401: ECQGKVNKFL QHATCKVPKV LGDIMESIAG AIFVDTDFDV DVVWKIVEPL LSPMITPDNL ALPPYRELLE LCSHLGYFIN SKCSSRGEEV TIDMSVQLRD
1501: ELLIAQGHDR NKKSAKAKAA ARILADLKKR GLSMKQCSSK SKQLDIISPD LQYPLLESPL DYCDVNVNPS LGGLPSLKEA VVLQLKMDKG GPRSALFKLC
1601: KRLQWPMPEF EFVEQRFRTP IVLDGVTTTN FNSFVSTITL HIPDVTAITI QGKRQTDKKS SQDSASLIML HKLQELKVCI CKT
0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK
Arabidopsis Description
DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.