Factsheet for AT3G43920.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30942	Canola	nucleus	65.0	81.44
Bra019456.1-P	Field mustard	nucleus	72.97	79.68
CDY21223	Canola	nucleus	75.76	78.18
GSMUA_Achr10P...	Banana	nucleus	19.81	47.21
KRH61605	Soybean	nucleus	49.24	46.48
Solyc08g067210.2.1	Tomato	nucleus	40.19	44.41
KRH52276	Soybean	cytosol	14.05	44.14
TraesCS1B01G177600.1	Wheat	nucleus	28.16	42.95
KXG33962	Sorghum	nucleus	43.29	41.28
Os01t0909200-01	Rice	cytosol	43.04	41.19
Zm00001d042432_P007	Maize	cytosol	43.35	41.07
TraesCS3D01G411200.6	Wheat	nucleus	40.89	39.53
TraesCS1A01G160900.1	Wheat	nucleus	40.51	39.34
TraesCS3A01G415400.2	Wheat	nucleus	41.58	39.15
HORVU3Hr1G092430.9	Barley	cytosol, nucleus, plastid	41.71	39.11
TraesCS3B01G450600.3	Wheat	nucleus	41.39	39.0
TraesCS1D01G158000.2	Wheat	nucleus	40.13	38.94
Os10t0485600-01	Rice	cytosol, plastid	40.19	38.79
GSMUA_Achr5P10880_001	Banana	cytosol	39.05	38.61
OQU91611	Sorghum	nucleus, plastid	40.0	38.61
Zm00001d032655_P006	Maize	nucleus	38.35	38.6
VIT_04s0008g02170.t01	Wine grape	mitochondrion	46.2	37.57
HORVU1Hr1G042710.5	Barley	cytosol, mitochondrion, nucleus	40.0	37.55
GSMUA_Achr10P...	Banana	cytosol	8.1	30.26
AT3G03300.1	Thale cress	nucleus	24.43	27.81
AT4G15417.2	Thale cress	mitochondrion	4.94	26.99
AT3G20420.1	Thale cress	plastid	6.33	25.58
AT1G01040.2	Thale cress	nucleus	29.81	24.66
AT5G20320.1	Thale cress	cytosol	25.19	23.38
AT5G45150.1	Thale cress	cytosol	8.61	14.21

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.8	Gene3D:2.170.260.10	Gene3D:3.30.160.20	Gene3D:3.40.50.300	EntrezGene:823508
ProteinID:AEE77842.1	ProteinID:AEE77843.1	ArrayExpress:AT3G43920	EnsemblPlantsGene:AT3G43920	RefSeq:AT3G43920	TAIR:AT3G43920
RefSeq:AT3G43920-TAIR-G	EnsemblPlants:AT3G43920.2	TAIR:AT3G43920.2	Unigene:At.36217	ProteinID:CAB88120.1	Symbol:DCL3
InterPro:DEAD/DEAH_box_helicase_dom	EMBL:DQ479972	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0003824	GO:GO:0004386	GO:GO:0004518	GO:GO:0004519	GO:GO:0004525
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006396
GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0010216	GO:GO:0010267	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422
GO:GO:0031047	GO:GO:0040029	GO:GO:0046872	GO:GO:0051214	GO:GO:0051607	GO:GO:0090305
GO:GO:0090501	GO:GO:0090502	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR000999	InterPro:IPR001650
InterPro:IPR003100	InterPro:IPR014001	InterPro:IPR036389	RefSeq:NP_001154662.2	RefSeq:NP_189978.1	InterPro:P-loop_NTPase
InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF00270	PFAM:PF00271	PFAM:PF00636	PFAM:PF02170
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009049	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	ScanProsite:PS00517	PFscan:PS50142
PFscan:PS50821	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR14950	PANTHER:PTHR14950:SF31	UniProt:Q9LXW7
InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00487	SMART:SM00535	SMART:SM00949	SUPFAM:SSF101690
SUPFAM:SSF52540	SUPFAM:SSF69065	UniParc:UPI0001A7B32D	SEG:seg	:	:

Description

DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]

Coordinates

chr3:+:15753548..15760830

Molecular Weight (calculated)

177435.0 Da

IEP (calculated)

6.339

GRAVY (calculated)

-0.308

Length

1580 amino acids

Sequence
(BLAST)

0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: VKQQCCEIRA LVNLKVEEYF GAKGVDKWTS QRWDEEFSKH DVLVMTPQIL LDVLRSAFLK LEMVCLLIID ECHHTTGNHP YAKLMKEFYH ESTSKPKIFG
0201: LTASAVIRKG IVSSPSNYAA QVSELERLMD SKIFNPEERE GVEKFATTVK EGPILYNPSP SCSLELKEKL ETSHLKFDAS LRRLQELGKD SFLNMDNKFE
0301: TYQKRLSIDY REILHCLDNL GLICAHLAAE VCLEKISDTK EESETYKECS MVCKEFLEDI LSTIGVYLPQ DDKSLVDLQQ NHLSAVISGH VSPKLKELFH
0401: LLDSFRGDKQ KQCLILVERI ITAKVIERFV KKEASLAYLN VLYLTENNPS TNVSAQKMQI EIPDLFQHGK VNLLFITDVV EEGFQVPDCS CMVCFDLPKT
0501: MCSYSQSQKH AKQSNSKSIM FLERGNPKQR DHLHDLMRRE VLIQDPEAPN LKSCPPPVKN GHGVKEIGSM VIPDSNITVS EEAASTQTMS DPPSRNEQLP
0601: PCKKLRLDNN LLQSNGKEKV ASSKSKSSSS AAGSKKRKEL HGTTCANALS GTWGENIDGA TFQAYKFDFC CNISGEVYSS FSLLLESTLA EDVGKVEMDL
0701: YLVRKLVKAS VSPCGQIRLS QEELVKAKYF QQFFFNGMFG KLFVGSKSQG TKREFLLQTD TSSLWHPAFM FLLLPVETND LASSATIDWS AINSCASIVE
0801: FLKKNSLLDL RDSDGNQCNT SSGQEVLLDD KMEETNLIHF ANASSDKNSL EELVVIAIHT GRIYSIVEAV SDSSAMSPFE VDASSGYATY AEYFNKKYGI
0901: VLAHPNQPLM KLKQSHHAHN LLVDFNEEMV VKTEPKAGNV RKRKPNIHAH LPPELLARID VPRAVLKSIY LLPSVMHRLE SLMLASQLRE EIDCSIDNFS
1001: ISSTSILEAV TTLTCPESFS MERLELLGDS VLKYVASCHL FLKYPDKDEG QLSRQRQSII SNSNLHRLTT SRKLQGYIRN GAFEPRRWTA PGQFSLFPVP
1101: CKCGIDTREV PLDPKFFTEN MTIKIGKSCD MGHRWVVSKS VSDCAEALIG AYYVSGGLSA SLHMMKWLGI DVDFDPNLVV EAINRVSLRC YIPKEDELIE
1201: LERKIQHEFS AKFLLKEAIT HSSLRESYSY ERLEFLGDSV LDFLITRHLF NTYEQTGPGE MTDLRSACVN NENFAQVAVK NNLHTHLQRC ATVLETQIND
1301: YLMSFQKPDE TGRSIPSIQG PKALGDVVES IAGALLIDTR LDLDQVWRVF EPLLSPLVTP DKLQLPPYRE LNELCDSLGY FFRVKCSNDG VKAQATIQLQ
1401: LDDVLLTGDG SEQTNKLALG KAASHLLTQL EKRNISRKTS LGDNQSSMDV NLACNHSDRE TLTSETTEIQ SIVIPFIGPI NMKKGGPRGT LHEFCKKHLW
1501: PMPTFDTSEE KSRTPFEFID GGEKRTSFSS FTSTITLRIP NREAVMYAGE ARPDKKSSFD SAVVELLYEL ERRKIVIIQK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.