Factsheet for Bra019456.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30942	Canola	nucleus	86.59	99.37
CDY21223	Canola	nucleus	95.65	90.4
AT3G43920.2	Thale cress	cytosol, nucleus, plastid	79.68	72.97
GSMUA_Achr10P...	Banana	nucleus	21.77	47.51
KRH52276	Soybean	cytosol	15.2	43.74
Solyc08g067210.2.1	Tomato	nucleus	41.95	42.45
KRH61605	Soybean	nucleus	48.03	41.52
TraesCS1B01G177600.1	Wheat	nucleus	29.44	41.12
Zm00001d042432_P007	Maize	cytosol	41.81	36.27
KXG33962	Sorghum	nucleus	41.47	36.21
Os01t0909200-01	Rice	cytosol	41.26	36.16
TraesCS3D01G411200.6	Wheat	nucleus	40.08	35.5
TraesCS3A01G415400.2	Wheat	nucleus	40.98	35.34
HORVU3Hr1G092430.9	Barley	cytosol, nucleus, plastid	41.12	35.31
TraesCS3B01G450600.3	Wheat	nucleus	40.77	35.18
VIT_04s0008g02170.t01	Wine grape	mitochondrion	47.2	35.15
TraesCS1A01G160900.1	Wheat	nucleus	39.05	34.73
TraesCS1D01G158000.2	Wheat	nucleus	38.63	34.34
Os10t0485600-01	Rice	cytosol, plastid	38.77	34.27
OQU91611	Sorghum	nucleus, plastid	38.56	34.09
GSMUA_Achr5P10880_001	Banana	cytosol	37.53	33.98
Zm00001d032655_P006	Maize	nucleus	36.7	33.82
HORVU1Hr1G042710.5	Barley	cytosol, mitochondrion, nucleus	38.42	33.04
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	6.22	31.69
Bra039552.1-P	Field mustard	cytosol	5.87	30.04
Bra035784.1-P	Field mustard	cytosol	6.5	28.06
GSMUA_Achr10P...	Banana	cytosol	8.15	27.9
Bra031999.1-P	Field mustard	nucleus	23.15	26.23
Bra002293.1-P	Field mustard	nucleus, plastid	25.36	22.36
Bra033293.1-P	Field mustard	cytosol, nucleus, plastid	28.27	22.16

Protein Annotations

Gene3D:1.10.1520.10	MapMan:12.5.1.8	Gene3D:2.170.260.10	Gene3D:3.30.160.20	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra019456
EnsemblPlants:Bra019456.1	EnsemblPlants:Bra019456.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006259
GO:GO:0006396	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0010216	GO:GO:0010267	GO:GO:0016787	GO:GO:0030422	GO:GO:0031047
GO:GO:0040029	GO:GO:0051214	GO:GO:0051607	GO:GO:0090501	GO:GO:0090502	InterPro:Helicase_C
InterPro:IPR000999	InterPro:IPR001650	InterPro:IPR003100	InterPro:IPR036389	UniProt:M4DSG3	InterPro:P-loop_NTPase
InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF00271	PFAM:PF00636	PFAM:PF02170	ScanProsite:PS00517
PFscan:PS50142	PFscan:PS50821	PFscan:PS51194	PANTHER:PTHR14950	PANTHER:PTHR14950:SF31	InterPro:RNase_III_dom
InterPro:RNase_III_sf	SMART:SM00535	SMART:SM00949	SUPFAM:SSF101690	SUPFAM:SSF52540	SUPFAM:SSF69065
UniParc:UPI000253F15A	SEG:seg	:	:	:	:

Description

AT3G43920 (E=0.0) DCL3, ATDCL3 | ribonuclease III family protein

Coordinates

chrA06:-:13472787..13479194

Molecular Weight (calculated)

162682.0 Da

IEP (calculated)

6.205

GRAVY (calculated)

-0.334

Length

1447 amino acids

Sequence
(BLAST)

0001: MEGDEPRGGG SDSLSVKRKF YEIDEDSSPM NGSSELYEVA QTRNTIALLE TGVDKFGHCC EIRAHLNLKV EDYYGAKGVD KWTSHRWEEE LFKNEANALR
0101: GGFLKVEMVR LLVIDECHRT TGNHPYAMIM KIFNPQGQKG VDKFVTKVKE GPVFYDPAPL CRLELKDKLR TSHLKFDASL LSLLQELEKG NCQDVEENKF
0201: KAYQKRLSAD YHDILHCLDS LGLICAHLAA EICLEKISET ETYNECSMVC KEFLSDVLST LGLFLQKEEK NSVDLPQDNP SAVISGLVSP KLQELFHLLD
0301: SLRGEMQKPC LIIVERIITA EVIERYVKKQ ASLGYLYVLS LIGNNASTQA LAQKMQDSFH VGKVNLVFIT DVVEEGFHMP DCSCMVCFDL PKTVCSYSQS
0401: QELAKQSNSK SIMFLERGNP SQRDHLYDLM RRQVPKETPN QANCQDLKEN GATVHDEPAP KEQSANKRLR QLQVLDKNLL QCSAKEKAPS SKSKSSASAA
0501: GSKKRKELHG TTRANALSGI WGENLDGAIF QAYKLDFWSN ISGDAYSSFS LLIESTLADD VGNVEMSLYL VRKYIKASVS HCGQIRLSHE EIVKAKCFQQ
0601: FFFNGMFGKL FVGSKSLGTK REFLLQTDTS SLWHPSFMFL MLPVETGDLV SSATVDWSAI NSCACVVDFL KKNPLLELQV GEENHCNTSS GQEGTQKKET
0701: ETNLIHFANA LSDKNSIEEI VVIAIHTGRI YSIVEAVKDS SAMSPFEDEA SLEYATYAEY FNKKYGIVLA HPNQPLLKLK QSHHAHNLLV NFSDEVIEKK
0801: EPNVSNVRKT KPNIHAHLPP ELLVRIDVPR SVTKSIYLLP SVMHRLESLM LASQLREEID CSIDNFSISS TSVLEALTTL TSAEAFSMER LELLGDSVLK
0901: YVVSCSLYLK YPNKDEGQLS RERQSIISNS NLHRLATDRK LQGYIRNGAF EPRRWTAPGQ CSLFPVPCKC GIDSREVPLE PRFFTENMTI KIGKSCDMGH
1001: RWTVSKSVSD CAEALIGAYY VSGGLTAALH MMKWLGFDVE FDRELVNEAI NRVSLRCYIP KDDELTELET KIRREFSSKF LLKEAITHSS VHESYSYERL
1101: EFLGDSVLDF LITRHLFNTY EKTGPGEMTD LRSACVNNEN FAQVAVKNNL HTHLQRCATV LETQIKEYLM SFSEPDETGR TIPSMQGPKA LGDVVESIAG
1201: ALLIDTRLDL EEVWRVFEPL LSPLVTPDKL QLPPYRELNE LCDSLGYFFR VKCANDGVKA QATIQLQLDD VLLTGDGSEQ TNKLALGKAA SHLLKQLEMR
1301: NISRKTGNGD DQSSMDIKLA CNLSDRETPS SDSVEMQGTV VPVIGPINMK KGGPRGTLHE FCKKHLWPMP TFDTLEDKSR TPFEFTDGNE KRTSFSSFIS
1401: TITLRIPNRE AVMYSGEARP DKKSSFDSAV VELLYELERR MILTIKK

Best Arabidopsis Sequence Match ( AT3G43920.1 )
(BLAST)

0001: MHSSLEPEKM EEGGGSNSLK RKFSEIDGDQ NLDSVSSPMM TDSNGSYELK VYEVAKNRNI IAVLGTGIDK SEITKRLIKA MGSSDTDKRL IIFLAPTVNL
0101: QCCEIRALVN LKVEEYFGAK GVDKWTSQRW DEEFSKHDVL VMTPQILLDV LRSAFLKLEM VCLLIIDECH HTTGNHPYAK LMKIFNPEER EGVEKFATTV
0201: KEGPILYNPS PSCSLELKEK LETSHLKFDA SLRRLQELGK DSFLNMDNKF ETYQKRLSID YREILHCLDN LGLICAHLAA EVCLEKISDT KEESETYKEC
0301: SMVCKEFLED ILSTIGVYLP QDDKSLVDLQ QNHLSAVISG HVSPKLKELF HLLDSFRGDK QKQCLILVER IITAKVIERF VKKEASLAYL NVLYLTENNP
0401: STNVSAQKMQ IEIPDLFQHG KVNLLFITDV VEEGFQVPDC SCMVCFDLPK TMCSYSQSQK HAKQSNSKSI MFLERGNPKQ RDHLHDLMRR EVLIQDPEAP
0501: NLKSCPPPVK NGHGVKEIGS MVIPDSNITV SEEAASTQTM SDPPSRNEQL PPCKKLRLDN NLLQSNGKEK VASSKSKSSS SAAGSKKRKE LHGTTCANAL
0601: SGTWGENIDG ATFQAYKFDF CCNISGEVYS SFSLLLESTL AEDVGKVEMD LYLVRKLVKA SVSPCGQIRL SQEELVKAKY FQQFFFNGMF GKLFVGSKSQ
0701: GTKREFLLQT DTSSLWHPAF MFLLLPVETN DLASSATIDW SAINSCASIV EFLKKNSLLD LRDSDGNQCN TSSGQEVLLD DKMEETNLIH FANASSDKNS
0801: LEELVVIAIH TGRIYSIVEA VSDSSAMSPF EVDASSGYAT YAEYFNKKYG IVLAHPNQPL MKLKQSHHAH NLLVDFNEEM VVKTEPKAGN VRKRKPNIHA
0901: HLPPELLARI DVPRAVLKSI YLLPSVMHRL ESLMLASQLR EEIDCSIDNF SISSTSILEA VTTLTCPESF SMERLELLGD SVLKYVASCH LFLKYPDKDE
1001: GQLSRQRQSI ISNSNLHRLT TSRKLQGYIR NGAFEPRRWT APGQFSLFPV PCKCGIDTRE VPLDPKFFTE NMTIKIGKSC DMGHRWVVSK SVSDCAEALI
1101: GAYYVSGGLS ASLHMMKWLG IDVDFDPNLV VEAINRVSLR CYIPKEDELI ELERKIQHEF SAKFLLKEAI THSSLRESYS YERLEFLGDS VLDFLITRHL
1201: FNTYEQTGPG EMTDLRSACV NNENFAQVAV KNNLHTHLQR CATVLETQIN DYLMSFQKPD ETGRSIPSIQ GPKALGDVVE SIAGALLIDT RLDLDQVWRV
1301: FEPLLSPLVT PDKLQLPPYR ELNELCDSLG YFFRVKCSND GVKAQATIQL QLDDVLLTGD GSEQTNKLAL GKAASHLLTQ LEKRNISRKT SLGDNQSSMD
1401: VNLACNHSDR ETLTSETTEI QSIVIPFIGP INMKKGGPRG TLHEFCKKHL WPMPTFDTSE EKSRTPFEFI DGGEKRTSFS SFTSTITLRI PNREAVMYAG
1501: EARPDKKSSF DSAVVELLYE LERRKIVIIQ K

Arabidopsis Description

DCL3Endoribonuclease Dicer homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXW7]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.