Factsheet for Bra039552.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22924	Canola	cytosol	97.53	97.53
CDY48286	Canola	cytosol	97.17	97.17
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	77.39	77.11
AT4G15417.2	Thale cress	mitochondrion	56.18	55.02
PGSC0003DMT400086351	Potato	cytosol	32.51	45.32
Solyc05g041920.2.1	Tomato	cytosol	42.4	45.11
VIT_12s0059g01120.t01	Wine grape	cytosol	45.23	44.6
PGSC0003DMT400053499	Potato	mitochondrion	43.46	42.27
EES13704	Sorghum	cytosol	41.34	40.21
Solyc07g049160.2.1	Tomato	mitochondrion	41.34	39.93
PGSC0003DMT400001808	Potato	cytosol	34.63	39.04
PGSC0003DMT400001805	Potato	mitochondrion	40.28	38.91
Os06t0358800-01	Rice	cytosol	39.93	37.79
TraesCS7B01G248100.1	Wheat	cytosol	40.64	37.22
TraesCS7D01G344100.1	Wheat	cytosol	40.64	37.22
TraesCS7D01G344200.1	Wheat	cytosol	40.64	36.74
TraesCS7A01G336500.1	Wheat	cytosol	40.28	36.54
Solyc05g024210.1.1	Tomato	cytosol	42.4	35.71
Solyc07g049150.2.1	Tomato	cytosol	33.57	35.45
Zm00001d032362_P002	Maize	mitochondrion	40.28	34.65
HORVU7Hr1G082860.4	Barley	plastid	40.28	31.75
Bra035784.1-P	Field mustard	cytosol	32.16	27.16
TraesCS2D01G479300.1	Wheat	plastid	32.86	26.88
Bra031999.1-P	Field mustard	nucleus	30.04	6.66
Bra019456.1-P	Field mustard	nucleus	30.04	5.87
Bra033293.1-P	Field mustard	cytosol, nucleus, plastid	36.75	5.63
Bra002293.1-P	Field mustard	nucleus, plastid	27.21	4.69
GSMUA_Achr10P...	Banana	extracellular	2.47	3.74
GSMUA_Achr9P22470_001	Banana	cytosol	2.12	1.57

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	EnsemblPlantsGene:Bra039552	EnsemblPlants:Bra039552.1	EnsemblPlants:Bra039552.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501
GO:GO:0090502	InterPro:IPR000999	InterPro:IPR036389	UniProt:M4FEN0	PFAM:PF00636	PFscan:PS50142
PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF54768
SUPFAM:SSF69065	UniParc:UPI0002544C6B	:	:	:	:

Description

AT4G15417 (E=5e-079) ATRTL1 | ATRTL1 (ARABIDOPSIS THALIANA RNASEIII-LIKE 1); RNA binding / ribonuclease III

Coordinates

chrA01:-:11792258..11793803

Molecular Weight (calculated)

32502.9 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.400

Length

283 amino acids

Sequence
(BLAST)

001: MGTQLPNADT ESLQRLLNLS LGVNDNNTEN VNASQPANSI GTDQPLGIEF VEKILNYEFK DKNLLLQAFT DASFDENCVS YERLEFLGDT VLNMIITKYL
101: YFRYEDATPG SLTRLRAFNV DREKLARVAV KYNLHRYLRH KKPLLEDQIL KFAKDIEKYP LHSRHLLETP KTLADIVEST IGAIYTDCDS FETVCKVVKP
201: LLEPIIPLDK LENHPVTELN EMCQKKNLKL KFDDNTWEVD KTVRVFIEDH LVGHGHHLVK KDIAKNCAAQ NALEKFSHTF PQI

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.