Factsheet for Solyc07g049160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001805	Potato	mitochondrion	95.9	95.9
Solyc05g041920.2.1	Tomato	cytosol	47.1	51.88
VIT_12s0059g01120.t01	Wine grape	cytosol	42.66	43.55
Solyc07g049150.2.1	Tomato	cytosol	38.91	42.54
CDY48286	Canola	cytosol	39.93	41.34
Bra039552.1-P	Field mustard	cytosol	39.93	41.34
CDY22924	Canola	cytosol	39.59	40.99
CDY09765	Canola	cytosol, nucleus, peroxisome	39.25	40.49
CDX90592	Canola	cytosol, nucleus, peroxisome	39.25	40.49
Bra012789.1-P	Field mustard	cytosol, nucleus, peroxisome	39.25	40.49
Solyc05g024210.1.1	Tomato	cytosol	45.73	39.88
AT4G15417.2	Thale cress	mitochondrion	36.52	37.02
Os06t0358800-01	Rice	cytosol	36.52	35.79
EES13704	Sorghum	cytosol	34.81	35.05
TraesCS7B01G248100.1	Wheat	cytosol	35.84	33.98
TraesCS7D01G344100.1	Wheat	cytosol	35.49	33.66
TraesCS7A01G336500.1	Wheat	cytosol	35.84	33.65
Solyc10g006210.1.1	Tomato	cytosol	12.29	33.33
TraesCS7D01G344200.1	Wheat	cytosol	35.15	32.91
Zm00001d032362_P002	Maize	mitochondrion	34.81	31.0
HORVU7Hr1G082860.4	Barley	plastid	35.15	28.69
TraesCS2D01G479300.1	Wheat	plastid	29.69	25.14
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	31.4	23.53
Solyc11g008540.1.1	Tomato	mitochondrion	27.65	5.99
Solyc11g008530.1.1	Tomato	mitochondrion	26.62	5.92
Solyc11g008520.1.1	Tomato	nucleus	27.65	5.67
Solyc06g048960.2.1	Tomato	vacuole	26.96	5.65
Solyc08g067210.2.1	Tomato	nucleus	26.62	5.45
Solyc10g005130.2.1	Tomato	nucleus	32.08	4.98
Solyc07g005030.2.1	Tomato	cytosol	25.94	4.95
GSMUA_Achr10P...	Banana	extracellular	2.05	3.21
GSMUA_Achr9P22470_001	Banana	cytosol	2.05	1.57
Solyc08g067200.1.1	Tomato	cytosol	0.34	0.34

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422	GO:GO:0040029
GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR036389	UniProt:K4CF20	PFAM:PF00636
ScanProsite:PS00517	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf
SMART:SM00535	SUPFAM:SSF54768	SUPFAM:SSF69065	EnsemblPlantsGene:Solyc07g049160.2	EnsemblPlants:Solyc07g049160.2.1	UniParc:UPI000276B04D

Description

No Description!

Coordinates

chr7:-:59419726..59425100

Molecular Weight (calculated)

33369.2 Da

IEP (calculated)

7.159

GRAVY (calculated)

-0.284

Length

293 amino acids

Sequence
(BLAST)

001: MGSWLRPFLA QTLNWVSTQN LHKYGAVLNR FLPGILENEE ATKTTSQDDI SQNVEEVQKI IGYDFNDRNL LRQAFTHTSY HKDCISYERL EYVGDSVLNF
101: MITKEHFSKY PDLPPGLLSP LRAANVDTEK LARAAVKHSF HKYLQHGKPI LTRRIQSFIN VIPEYPLHSH GLIDAPKMLA DVVESTIGAV FIDSNSSIDT
201: TWEVAKILLE PIITPEMLET NPVKKLYETC QKHKLKVRVV DMWSHDGSFE VFVDDQMRGK GMCHVKKEIA LNRAANKAYN EVIGMLSVGN INI

Best Arabidopsis Sequence Match ( AT4G15417.2 )
(BLAST)

001: MNKTQTQQKL NQRHISLSSN PPLVSMGSQL SNAIDGKDNT KTIGSADPDQ LMEIESLEKI LNYKFKDKSL LLKAFTDASY VDDKSESYEL LELLGDSILN
101: MGIIYDFIKL YPKEAPGPLT KLRAVNVDTE KLARVAVNHQ LYSYLRHKKP LLEEQILEFV EAMEKYPLHS NGLLKVPKVL ADIVESTIGA IFMDCNSTET
201: VWKVIKPLLE PIIHLDKMKS HPMTELNEMC QKRNLKLTSK DTWEENQTYC FHIEDKFVGC GHHPVKKETA RNFAAKNAID NFAKFFGDL

Arabidopsis Description

ATRTL1RNAse II-like 1 [Source:TAIR;Acc:AT4G15417]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.