Factsheet for Solyc10g006210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037378	Potato	cytosol	93.52	34.12
Os01t0551100-01	Rice	cytosol	44.44	18.75
TraesCS7A01G513500.1	Wheat	nucleus	49.07	16.72
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	58.33	16.11
Os05t0271300-00	Rice	cytosol, nucleus, plastid	47.22	16.09
TraesCS7B01G428200.1	Wheat	mitochondrion	50.0	14.79
GSMUA_Achr2P15170_001	Banana	cytosol	46.3	14.71
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	46.3	14.66
TraesCS7A01G512700.1	Wheat	mitochondrion	49.07	14.6
TraesCS7D01G398600.2	Wheat	mitochondrion, nucleus	50.0	14.52
TraesCS7D01G502800.1	Wheat	mitochondrion, nucleus	49.07	14.4
TraesCS7D01G504300.3	Wheat	mitochondrion	49.07	14.32
Solyc07g049150.2.1	Tomato	cytosol	35.19	14.18
TraesCS7B01G430900.2	Wheat	mitochondrion	49.07	14.17
TraesCS7A01G513400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	48.15	14.02
Zm00001d009879_P002	Maize	plastid	48.15	13.83
TraesCSU01G086900.1	Wheat	mitochondrion	47.22	13.75
HORVU7Hr1G115100.2	Barley	plastid	50.0	13.24
Solyc05g041920.2.1	Tomato	cytosol	32.41	13.16
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	47.22	12.53
Solyc07g049160.2.1	Tomato	mitochondrion	33.33	12.29
KXG21693	Sorghum	plastid	47.22	11.54
Solyc05g024210.1.1	Tomato	cytosol	34.26	11.01
Solyc11g008540.1.1	Tomato	mitochondrion	37.96	3.03
Solyc11g008530.1.1	Tomato	mitochondrion	36.11	2.96
Solyc06g048960.2.1	Tomato	vacuole	37.96	2.93
Solyc11g008520.1.1	Tomato	nucleus	36.11	2.73
Solyc08g067210.2.1	Tomato	nucleus	36.11	2.73
Solyc07g005030.2.1	Tomato	cytosol	36.11	2.54
Solyc10g005130.2.1	Tomato	nucleus	38.89	2.22
HORVU7Hr1G115000.1	Barley	nucleus	0.93	0.53
Solyc08g067200.1.1	Tomato	cytosol	0.93	0.34

Protein Annotations

Gene3D:1.10.1520.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422	GO:GO:0040029	GO:GO:0090501
GO:GO:0090502	InterPro:IPR000999	InterPro:IPR036389	UniProt:K4CXF3	PFAM:PF14622	PFscan:PS50142
PANTHER:PTHR14950	PANTHER:PTHR14950:SF35	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SUPFAM:SSF69065	EnsemblPlantsGene:Solyc10g006210.1
EnsemblPlants:Solyc10g006210.1.1	UniParc:UPI000276AB7F	:	:	:	:

Description

No Description!

Coordinates

chr10:-:909652..909978

Molecular Weight (calculated)

11852.0 Da

IEP (calculated)

4.777

GRAVY (calculated)

-0.033

Length

108 amino acids

Sequence
(BLAST)

001: MVTDANRLTP AEEEITNTAT SVQAVEELLK YRFQNTKLLE EALTHSSCPN LITNYQRLAF VGDAALGLAI SSYFFVTYPD VDCGRLTDLR SANLSTEKLA
101: RVAVGHGL

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.