Factsheet for Os01t0551100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0551100-01
Os02t0565000-01
Os02t0747400-01
Os04t0445600-00
Os04t0654700-02
Os05t0271300-00
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20420.1	Os02t0565000-01	AT1G54060.1	21798944
AT3G20420.1	Os04t0445600-00	AT1G54060.1	21798944
AT3G20420.1	Os04t0654700-02	AT1G71230.1	21798944
AT3G20420.1	Os01t0551100-01	AT3G20420.1	21798944
AT3G20420.1	Os05t0271300-00	AT3G20420.1	21798944
AT3G20420.1	Os02t0747400-01	AT3G47620.1	21798944
AT3G20420.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006210.1.1	Tomato	cytosol	18.75	44.44
Os05t0271300-00	Rice	cytosol, nucleus, plastid	45.31	36.59
PGSC0003DMT400037378	Potato	cytosol	35.94	31.08
GSMUA_Achr7P11130_001	Banana	cytosol, nucleus, plastid	38.67	29.03
GSMUA_Achr2P15170_001	Banana	cytosol	37.5	28.24
VIT_19s0090g00940.t01	Wine grape	cytosol	34.77	26.41
PGSC0003DMT400033487	Potato	cytosol	37.11	25.89
GSMUA_Achr7P11120_001	Banana	cytosol, nucleus, plastid	40.23	25.31
KRH14361	Soybean	cytosol	32.81	24.35
Solyc12g014410.1.1	Tomato	cytosol, nucleus, plastid	37.11	24.3
CDY54644	Canola	cytosol	31.64	24.18
Bra035784.1-P	Field mustard	cytosol	31.64	24.18
Os06t0358800-01	Rice	cytosol	26.56	22.74
CDY29825	Canola	plastid	32.42	22.13
AT3G20420.1	Thale cress	plastid	30.86	20.2
Os09t0315050-00	Rice	cytosol, extracellular, nucleus	10.94	19.58
AT5G45150.1	Thale cress	cytosol	24.61	6.58
Os03t0583900-01	Rice	nucleus	25.39	4.61
Os01t0909200-01	Rice	cytosol	29.3	4.54
Os04t0509300-02	Rice	cytosol	26.17	4.04
Os10t0485600-01	Rice	cytosol, plastid	24.22	3.79
Os03t0121800-01	Rice	cytosol, nucleus, plasma membrane	26.95	3.66

Protein Annotations

Gene3D:1.10.1520.10	MapMan:35.1	EntrezGene:4325844	EMBL:AK067932	ProteinID:BAD87969.1	ProteinID:BAD88131.1
ProteinID:BAF05220.1	ProteinID:BAS72651.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016442	GO:GO:0016787	GO:GO:0030422	GO:GO:0040029
GO:GO:0046872	GO:GO:0090305	GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR036389
EnsemblPlantsGene:Os01g0551100	EnsemblPlants:Os01t0551100-01	PFAM:PF00636	ScanProsite:PS00517	PFscan:PS50142	PANTHER:PTHR14950
PANTHER:PTHR14950:SF35	UniProt:Q5JK90	InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00535	SUPFAM:SSF69065
UniParc:UPI00004C2B22	RefSeq:XP_015626271.1	SEG:seg	:	:	:

Description

Ribonuclease III domain containing protein. (Os01t0551100-01)

Coordinates

chr1:-:20665550..20671003

Molecular Weight (calculated)

28174.4 Da

IEP (calculated)

4.989

GRAVY (calculated)

-0.359

Length

256 amino acids

Sequence
(BLAST)

001: MQQQQHPAPG AEFVADRDAA RAEVERALGG YSFRDGGALL LEDALTHSVH PRDEAGGRAR HQRLEFLGDA ALGLAFATIF YRDDPGLDQG DLTVLRSANV
101: STQKLARVAV RRRLYPLLRR YNCAPQDHEV SRFTKSVEGP YSGDPIEGPR VLADIVEAIV GAVYLDSKLD LEVLQKVAKL LCEPIITKKA LLEDPESMLN
201: ELGGEHREDL EIKILAWRKV ANVVDDGREQ AITTSGLGNG SEDEVGKLRT IRIEEA

Best Arabidopsis Sequence Match ( AT3G20420.1 )
(BLAST)

001: MDHSISPEYN FPAITRCSLS NSLPHRPPSP LPSSADIHRF YNSLSPSAPS VPVSSEMESM EAVEKILNYK FSNKSLLKEA ITHTSCTDFP SYERLEFIGD
101: SAIGLAISNY LYLTYPSLEP HDLSLLRAAN VSTEKLARVS LNHGLYSFLR RNAPSLDEKV KEFSEAVGKE DDLSVSYGGL VKAPKVLADL FESLAGAVYV
201: DVNFDLQRLW VIFRGLLEPI VTLDDLQKQP QPVSMLFKLC HKHKKRIDIK NWKDGNVSIA VIYLDDELLA SGRAENKDIA RLIAAKEALR KLSEVFPVEM
301: VIDEDSVEIQ LTHAKTKLNE ICLKKKWPKP IYSVEEDRSS VQGKRFVCSA KIKITEEKTL YMKGDEQSKI KKAESSSAYH MIRALRKSHY L

Arabidopsis Description

RTL2Ribonuclease 3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.