Factsheet for Os09t0315050-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 2
nucleus 3
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0307400-01
Os09t0508500-02
Os11t0109900-01
Os12t0109900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03300.1	Os05t0307400-01	AT1G09700.1	15821876
AT3G03300.1	Os11t0109900-01	AT1G09700.1	15821876
AT3G03300.1	Os12t0109900-02	AT1G09700.1	15821876
AT3G03300.1	Os09t0508500-02	AT5G41070.1	15821876

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11802	Soybean	cytosol	31.47	15.79
Os06t0358800-01	Rice	cytosol	25.87	12.37
Os05t0271300-00	Rice	cytosol, nucleus, plastid	25.17	11.36
Os01t0551100-01	Rice	cytosol	19.58	10.94
Os03t0583900-01	Rice	nucleus	100.0	10.14
Zm00001d013797_P006	Maize	nucleus	50.35	9.8
KXG38096	Sorghum	plastid	50.35	9.25
TraesCS5B01G079900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	67.83	7.18
TraesCS5A01G073600.1	Wheat	cytosol, nucleus, plastid	67.83	6.93
TraesCS5D01G086900.1	Wheat	cytosol	67.83	6.92
KRG97157	Soybean	cytosol, nucleus, plasma membrane	37.76	6.85
HORVU5Hr1G019300.8	Barley	plastid	68.53	6.64
OQU91441	Sorghum	nucleus	61.54	6.35
Zm00001d013796_P005	Maize	cytosol, endoplasmic reticulum, nucleus	60.84	5.94
PGSC0003DMT400042918	Potato	nucleus	37.76	4.89
Bra031999.1-P	Field mustard	nucleus	39.86	4.46
CDY50692	Canola	nucleus	40.56	4.18
CDY43132	Canola	cytosol, nucleus, plastid	39.86	4.11
Solyc11g008540.1.1	Tomato	mitochondrion	38.46	4.07
AT3G03300.1	Thale cress	nucleus	39.16	4.03
VIT_04s0023g00920.t01	Wine grape	cytosol, nucleus, plastid	38.46	3.94
KRH36818	Soybean	cytosol, nucleus, plastid	38.46	3.89
Solyc06g048960.2.1	Tomato	vacuole	37.06	3.79
KRH36816	Soybean	cytosol	36.36	3.66
Solyc11g008520.1.1	Tomato	nucleus	36.36	3.64
Solyc11g008530.1.1	Tomato	mitochondrion	32.87	3.57
Os01t0909200-01	Rice	cytosol	31.47	2.73
Os03t0121800-01	Rice	cytosol, nucleus, plasma membrane	30.77	2.34
Os04t0509300-02	Rice	cytosol	25.17	2.17
Os10t0485600-01	Rice	cytosol, plastid	23.78	2.08

Protein Annotations

Gene3D:1.10.1520.10	Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A0P0XJV4	ProteinID:BAT07409.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR014720	InterPro:IPR036389	EnsemblPlantsGene:Os09g0315050
EnsemblPlants:Os09t0315050-00	PFAM:PF00035	PFscan:PS50137	PFscan:PS50142	PANTHER:PTHR14950	PANTHER:PTHR14950:SF19
InterPro:RNase_III_dom	InterPro:RNase_III_sf	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0003938F33	InterPro:dsRBD_dom
SEG:seg	:	:	:	:	:

Description

Similar to Endoribonuclease Dicer homolog 2b. (Os09t0315050-00)

Coordinates

chr9:-:8647061..8647995

Molecular Weight (calculated)

15510.7 Da

IEP (calculated)

8.449

GRAVY (calculated)

-0.203

Length

143 amino acids

Sequence
(BLAST)

001: MSYYLGQSFT GPSYGWEAGI GLPKVLGDVI ESIAGAIYLD SKCDKEVVWR SMKRLLEPLA TPETIEPDPV KGLQEFCDRR SFKITYEKNH VDGVSSVIAR
101: VKAGETTYSA TKSGPCKLAK KLASKAVLKD LIAGHKDTEA AAV

Best Arabidopsis Sequence Match ( AT3G03300.4 )
(BLAST)

0001: MNSKVYTCEN ESVLAGFVPF STPSFKYYQH IKIPSPKRAS LVEKLERLTI KHRLSLGTLD LNSSTVDSVE KRLLRISSTL TYCLDDLGIL LAQKAAQSLS
0101: ASQNDSFLWG ELNMFSVALV KKFCSDASQE FLAEIPQGLN WSVANINGNA EAGLLTLKTV CLIETLLGYS SLENIRCIIF VDRVITAIVL ESLLAEILPN
0201: CNNWKTKYVA GNNSGLQNQT RKKQNEIVED FRRGLVNIIV ATSILEEGLD VQSCNLVIRF DPASNICSFI QSRGRARMQN SDYLMMVESG DLLTQSRLMK
0301: YLSGGKRMRE ESLDHSLVPC PPLPDDSDEP LFRVESTGAT VTLSSSVSLI YHYCSRLPSD EYFKPAPRFD VNKDQGSCTL YLPKSCPVKE VKAEANNKVL
0401: KQAVCLKACI QLHKVGALSD HLVPDMVVAE TVSQKLEKIQ YNTEQPCYFP PELVSQFSAQ PETTYHFYLI RMKPNSPRNF HLNDVLLGTR VVLEDDIGNT
0501: SFRLEDHRGT IAVTLSYVGA FHLTQEEVLF CRRFQITLFR VLLDHSVENL MEALNGLHLR DGVALDYLLV PSTHSHETSL IDWEVIRSVN LTSHEVLEKH
0601: ENCSTNGASR ILHTKDGLFC TCVVQNALVY TPHNGYVYCT KGVLNNLNGN SLLTKRNSGD QTYIEYYEER HGIQLNFVDE PLLNGRHIFT LHSYLHMAKK
0701: KKEKEHDREF VELPPELCHV ILSPISVDMI YSYTFIPSVM QRIESLLIAY NLKKSIPKVN IPTIKVLEAI TTKKCEDQFH LESLETLGDS FLKYAVCQQL
0801: FQHCHTHHEG LLSTKKDGMI SNVMLCQFGC QQKLQGFIRD ECFEPKGWMV PGQSSAAYSL VNDTLPESRN IYVASRRNLK RKSVADVVES LIGAYLSEGG
0901: ELAALMFMNW VGIKVDFTTT KIQRDSPIQA EKLVNVGYME SLLNYSFEDK SLLVEALTHG SYMMPEIPRC YQRLEFLGDS VLDYLITKHL YDKYPCLSPG
1001: LLTDMRSASV NNECYALVAV KANLHKHILY ASHHLHKHIS RTVSEFEQSS LQSTFGWESD ISFPKVLGDV IESLAGAIFV DSGYNKEVVF ASIKPLLGCM
1101: ITPETVKLHP VRELTELCQK WQFELSKAKD FDSFTVEVKA KEMSFAHTAK ASDKKMAKKL AYKEVLNLLK NSLDY

Arabidopsis Description

DCL2Endoribonuclease Dicer homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EBC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.