Factsheet for Os12t0109900-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0149600-01
Os02t0639000-01
Os03t0583900-01
Os04t0529500-02
Os05t0307400-01
Os06t0698859-01
Os08t0517300-01
Os09t0315050-00
Os09t0508500-02
Os11t0109900-01
Os12t0109900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	Os05t0307400-01	AT1G09700.1	15821876
AT1G09700.1	Os11t0109900-01	AT1G09700.1	15821876
AT1G09700.1	Os12t0109900-02	AT1G09700.1	15821876
AT1G09700.1	Os02t0149600-01	AT2G27100.1	23141542
AT1G09700.1	Os06t0698859-01	AT2G27100.1	23141542
AT1G09700.1	Os08t0517300-01	AT2G27100.1	23141542
AT1G09700.1	Os03t0583900-01	AT3G03300.1	15821876
AT1G09700.1	Os09t0315050-00	AT3G03300.1	15821876
AT1G09700.1	Os02t0639000-01	AT4G21670.1	23141542
AT1G09700.1	Os04t0529500-02	AT4G21670.1	23141542
AT1G09700.1	Os09t0508500-02	AT5G41070.1	15821876
AT1G09700.1	Os09t0508500-02	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0307400-01	Rice	cytosol	23.81	25.17
Os11t0109900-01	Rice	cytosol	25.32	24.74
Bra019999.1-P	Field mustard	plastid	13.64	22.99
CDX93488	Canola	plastid	13.64	22.91
CDY20678	Canola	cytosol	13.42	22.38
Bra030793.1-P	Field mustard	cytosol	13.42	22.3
OQU82704	Sorghum	cytosol, nucleus	15.37	21.58
CDX94957	Canola	cytosol, nucleus, plastid	12.77	20.85
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	15.58	20.0
CDY31070	Canola	endoplasmic reticulum, golgi	13.42	19.31
KXG22802	Sorghum	mitochondrion	17.97	19.21
GSMUA_Achr11P...	Banana	nucleus	15.15	18.72
Zm00001d005065_P002	Maize	cytosol	17.32	18.43
KRH62246	Soybean	nucleus	14.07	18.11
TraesCS4D01G132400.1	Wheat	cytosol	15.58	17.65
KRH52961	Soybean	nucleus	13.85	17.63
TraesCS5D01G143500.2	Wheat	nucleus	19.7	17.23
TraesCS5B01G148100.2	Wheat	nucleus	19.7	17.17
TraesCS4A01G180400.1	Wheat	cytosol	14.94	16.95
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	14.94	16.91
TraesCS5A01G149400.2	Wheat	mitochondrion	19.7	16.37
VIT_18s0001g07670.t01	Wine grape	nucleus	13.64	15.75
HORVU5Hr1G047100.5	Barley	nucleus	18.83	15.18
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	13.2	15.02
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	13.2	14.09
AT1G09700.1	Thale cress	plastid	12.77	14.08
Os08t0384100-01	Rice	cytosol	6.71	9.94
Os01t0772000-01	Rice	mitochondrion, nucleus	7.58	7.94
Os09t0508500-02	Rice	nucleus	6.49	7.43
Os10t0480500-01	Rice	cytosol, nucleus, plastid	6.49	5.84
Os05t0150400-01	Rice	cytosol, nucleus	7.14	5.47

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.10.2.1.2	Gene3D:3.30.160.20	EntrezGene:4351288	UniProt:A0A0N7KTG4	ProteinID:BAT15546.1
InterPro:DRB	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0031929	GO:GO:0031931	InterPro:IPR002885	InterPro:IPR011990
InterPro:IPR014720	EnsemblPlantsGene:Os12g0109900	EnsemblPlants:Os12t0109900-02	PFAM:PF00035	PFAM:PF13041	PFAM:PF13812
PFscan:PS50137	PFscan:PS51375	PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	InterPro:Pentatricopeptide_repeat	SMART:SM00358
SUPFAM:SSF54768	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002249F21	InterPro:dsRBD_dom	SEG:seg

Description

dsRNA binding protein RBP, RNA binding proteinDouble-stranded RNA-binding-like domain containing protein. (Os12t0109900-01);Similar to DsRNA-binding protein ODB1. (Os12t0109900-02)

Coordinates

chr12:-:537602..540332

Molecular Weight (calculated)

49809.2 Da

IEP (calculated)

6.230

GRAVY (calculated)

0.068

Length

462 amino acids

Sequence
(BLAST)

001: MDMPPTPLPP ETANTSPAPN GATAGIRVEN CYVFKSRLQE YAQKTGLQTP EYHTFKEGPS HEPVFKSTVV INNTSYDSLP GFFNRKAAEQ SAAEVALMEI
101: VKSIPANANI PAVQETGLCN TGSQQLNLRE MHHHLLATLA RHRRLAAAAT LFSSTLRTAR ALNSLLAAIC SSPAFLRFAP KVLLLAAPSV SPDATTFHIL
201: TSTLCQAHRP AAAADLLCCM PSLLLDPDPA SCRAVLSSLC QYASAQDAVA FLDKMCHWGI SPSRSDYHAV FEALLQEGKV VEAYEVMKNK MGSNRVAPAL
301: AYFKLTMQAF SKCLEFDSVE EVFDEMLLRG LVPDVDVYNV YIGALCRKGD LARARQMMTC MEHAGCPPDV RTFGVVVAGC MSAGDMGTVR ELVQEATRRG
401: LQWDPPALSE LIGLLQAGGG ATQAQELLLE PLFVHDAPVL GQLIGALCKQ GLLGPATVVD DY

Best Arabidopsis Sequence Match ( AT2G38420.1 )
(BLAST)

001: MARSSSWHRM SNFMRKYRKI PHSSFKTKWN ENLKQKYAME ELRSNLLTDS ENASVMRTLL SSFQLHNCEP TPQAYRFVIK TLAKSSQLEN ISSVLYHLEV
101: SEKFDTPESI FRDVIAAYGF SGRIEEAIEV FFKIPNFRCV PSAYTLNALL LVLVRKRQSL ELVPEILVKA CRMGVRLEES TFGILIDALC RIGEVDCATE
201: LVRYMSQDSV IVDPRLYSRL LSSVCKHKDS SCFDVIGYLE DLRKTRFSPG LRDYTVVMRF LVEGGRGKEV VSVLNQMKCD RVEPDLVCYT IVLQGVIADE
301: DYPKADKLFD ELLLLGLAPD VYTYNVYING LCKQNDIEGA LKMMSSMNKL GSEPNVVTYN ILIKALVKAG DLSRAKTLWK EMETNGVNRN SHTFDIMISA
401: YIEVDEVVCA HGLLEEAFNM NVFVKSSRIE EVISRLCEKG LMDQAVELLA HLV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.