Factsheet for Os02t0639000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0235200-02
Os01t0861700-00
Os01t0974400-01
Os02t0149600-01
Os02t0516600-01
Os03t0275300-01
Os05t0112000-01
Os05t0307400-01
Os06t0698859-01
Os06t0724100-01
Os07t0573300-01
Os08t0517300-01
Os11t0109900-01
Os11t0171500-01
Os12t0109900-02
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	Os05t0307400-01	AT1G09700.1	23141542
AT4G21670.1	Os11t0109900-01	AT1G09700.1	23141542
AT4G21670.1	Os12t0109900-02	AT1G09700.1	23141542
AT4G21670.1	Os06t0724100-01	AT1G20110.1	18541146
AT4G21670.1	Os07t0573300-01	AT1G20110.1	18541146
AT4G21670.1	Os11t0171500-01	AT1G35670.1	19130088
AT4G21670.1	Os12t0169800-00	AT1G35670.1	19130088
AT4G21670.1	Os02t0149600-01	AT2G27100.1	23141542
AT4G21670.1	Os06t0698859-01	AT2G27100.1	23141542
AT4G21670.1	Os08t0517300-01	AT2G27100.1	23141542
AT4G21670.1	Os01t0974400-01	AT2G28840.1	18541146
AT4G21670.1	Os03t0275300-01	AT2G28840.1	18541146
AT4G21670.1	Os05t0112000-01	AT2G28840.1	18541146
AT4G21670.1	Os02t0516600-01	AT3G26730.1	18541146
AT4G21670.1	Os01t0235200-02	AT3G49250.1	18541146
AT4G21670.1	Os01t0861700-00	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029743_P001	Maize	cytosol	11.6	94.78
EES05486	Sorghum	cytosol	85.21	85.76
HORVU6Hr1G060230.12	Barley	nucleus	84.68	85.41
TraesCS6B01G264000.3	Wheat	nucleus	85.32	85.14
TraesCS6A01G235300.4	Wheat	nucleus	85.11	85.02
TraesCS6D01G218000.3	Wheat	nucleus	85.0	84.82
Zm00001d017373_P001	Maize	nucleus	83.4	81.5
Zm00001d051242_P002	Maize	cytosol, nucleus, plastid	80.21	80.47
Os04t0529500-02	Rice	extracellular	72.02	72.56
GSMUA_Achr11P...	Banana	cytosol	2.98	71.79
GSMUA_Achr8P14120_001	Banana	nucleus	62.13	61.54
GSMUA_Achr11P...	Banana	nucleus	60.21	61.06
PGSC0003DMT400057635	Potato	nucleus	52.87	56.41
Solyc02g078550.2.1	Tomato	nucleus	56.38	55.56
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	45.64	54.44
GSMUA_Achr11P...	Banana	extracellular	10.53	54.1
KRH20483	Soybean	nucleus	55.11	53.96
KRH50009	Soybean	nucleus	54.57	53.66
KRH10835	Soybean	nucleus	53.3	52.3
KRH21480	Soybean	nucleus	52.55	51.46
Bra020905.1-P	Field mustard	cytosol	46.17	51.24
CDY31421	Canola	cytosol	45.64	51.19
CDX76438	Canola	cytosol	46.06	51.12
CDX98696	Canola	nucleus	50.32	50.75
Bra038764.1-P	Field mustard	nucleus	51.06	50.69
CDX94046	Canola	nucleus	50.74	50.16
AT4G21670.1	Thale cress	nucleus	50.85	49.43
CDX79083	Canola	nucleus	43.09	47.15
Bra013546.1-P	Field mustard	nucleus	42.13	45.1
Os01t0857000-01	Rice	cytosol, nucleus, plastid	34.89	43.39
VIT_00s0370g00030.t01	Wine grape	nucleus, plastid	7.13	41.88

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	EntrezGene:4330100	EMBL:AK067293	ProteinID:BAD25346.1
ProteinID:BAD25901.1	ProteinID:BAF09450.1	ProteinID:BAS79961.1	ncoils:Coil	ProteinID:EEE57450.1	InterPro:FCP1_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008420	GO:GO:0009058	GO:GO:0009987	GO:GO:0016591
GO:GO:0016787	GO:GO:0019538	GO:GO:0070940	InterPro:HAD-like_sf	InterPro:IPR004274	InterPro:IPR014720
EnsemblPlantsGene:Os02g0639000	EnsemblPlants:Os02t0639000-01	PFAM:PF00035	PFAM:PF03031	PFscan:PS50137	PFscan:PS50969
PANTHER:PTHR23081	PANTHER:PTHR23081:SF11	UniProt:Q6H5U8	SMART:SM00358	SMART:SM00577	SUPFAM:SSF54768
SUPFAM:SSF56784	UniParc:UPI00003B442E	RefSeq:XP_015626278.1	InterPro:dsRBD_dom	SEG:seg	:

Description

LESION MIMIC AND SENESCENCEDouble stranded RNA binding domain (dsRBD) containing protein, Regulation of stress responses (Os02t0639000-01)

Coordinates

chr2:+:25626748..25636053

Molecular Weight (calculated)

104421.0 Da

IEP (calculated)

6.200

GRAVY (calculated)

-0.419

Length

940 amino acids

Sequence
(BLAST)

001: MIRSMVYFGN TSIGEVEVWP SGDASLAAAA WAREIRVDRL SPPSERCQPL AVMHTVAVGA RCLVMESRLP KAADEPPQPL VAMHAACLKE NKTAVVPLGE
101: EELHLVAMTS RRNLTNHACF WGYKVPFGLY NSCLTMLNLR CLGIVFDLDE TLIVANTTRS FEDRIDALQR KLSNETDPQR INGMIAEIKR YQDDKSILKQ
201: YIEGDQVYDD GKMYKVQPEL VPPLSDNHQP MTRPVIRLQE KNIILTRINP LIRDTSVLVR LRPAWEDLRS YLIARGRKRF EVYVCTMAER DYALEMWRLL
301: DPDSRLINSV QLNDRMVCVK SGLRKSLLNV FHDGSCHPGM ALVIDDRLKV WDEKDQSRVH VVPAFTPYYA PQAEANCSIP VLCVARNVAC NVRGGFFKDF
401: DEGLLPRISN VFYEDEINEI PSAPDVGNYL ISEDENVAAV NGNRDPLAFD GMADAEVERR MKEASGNAQA FTTTAANFVM PVLPGQNFVS SSVAPVAPSL
501: GMVPLSNNQG PPPFTQPVAQ LSLSDPLQGS PAREEGEVPE SELDPDTRRR LLILQHGQDT RDPTPPLPAV PPVQVPVPPV QPHGNWFPVE DGMNPNNLNR
601: GSAGFPLESE TMHYDKKQLP HPFFHGGENP ISSDRFSYQN QRYPSQLPHS EDHRVLQNHA PSRYRSFPGE ELATRHVSSS QRNNQIVPGQ HFARHAGSSA
701: GILEEIAMKC GSKVEYRSAL CDTADLQFSI EVWIVGEKVG EGIGRTRKEA QCQAAEISLR NLANKYLSSD PNKMTDMKEN GFGSNTNIFG YPGNSRDDVL
801: PIASTSEETR FVKMGENNSR KAGGSIAALK ELCTAEGYNL VFQARTSPDS SVGKEAYAEV EVCGQILGNG VGITWEDAKL QAADEALGML RSMLGPLAQK
901: RSSSPRSLAP SFDKRFKPDF PRAVQRVPYG RYSRIEGHVP

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.