Factsheet for Solyc02g078550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009090.2.1
Solyc02g094510.2.1
Solyc03g071790.1.1
Solyc03g071800.1.1
Solyc03g071820.1.1
Solyc03g083170.2.1
Solyc03g083210.2.1
Solyc04g076420.2.1
Solyc04g081750.2.1
Solyc06g051990.2.1
Solyc06g065380.2.1
Solyc06g076050.2.1
Solyc11g006830.1.1
Solyc11g018610.1.1
Solyc11g032150.1.1
Solyc11g032160.1.1
Solyc11g066020.1.1
Solyc12g013620.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	Solyc04g076420.2.1	AT1G09700.1	23141542
AT4G21670.1	Solyc04g081750.2.1	AT1G20110.1	18541146
AT4G21670.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT4G21670.1	Solyc11g018610.1.1	AT1G35670.1	19130088
AT4G21670.1	Solyc12g013620.1.1	AT1G52890.1	18541146
AT4G21670.1	Solyc01g009090.2.1	AT2G27100.1	23141542
AT4G21670.1	Solyc06g076050.2.1	AT2G28840.1	18541146
AT4G21670.1	Solyc11g066020.1.1	AT2G28840.1	18541146
AT4G21670.1	Solyc02g094510.2.1	AT3G26730.1	18541146
AT4G21670.1	Solyc03g071790.1.1	AT3G49250.1	18541146
AT4G21670.1	Solyc03g071800.1.1	AT3G49250.1	18541146
AT4G21670.1	Solyc03g071820.1.1	AT3G49250.1	18541146
AT4G21670.1	Solyc03g083170.2.1	AT3G49250.1	18541146
AT4G21670.1	Solyc03g083210.2.1	AT3G49250.1	18541146
AT4G21670.1	Solyc06g051990.2.1	AT3G49250.1	18541146
AT4G21670.1	Solyc11g032150.1.1	AT3G49250.1	18541146
AT4G21670.1	Solyc11g032160.1.1	AT3G49250.1	18541146
AT4G21670.1	Solyc11g006830.1.1	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057635	Potato	nucleus	89.1	96.48
Zm00001d029743_P001	Maize	cytosol	9.96	82.61
GSMUA_Achr11P...	Banana	cytosol	2.94	71.79
KRH50009	Soybean	nucleus	63.73	63.6
KRH20483	Soybean	nucleus	63.42	63.02
KRH10835	Soybean	nucleus	63.0	62.73
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	51.68	62.56
KRH21480	Soybean	nucleus	62.58	62.19
VIT_00s0370g00030.t01	Wine grape	nucleus, plastid	10.27	61.25
GSMUA_Achr8P14120_001	Banana	nucleus	57.02	57.32
EES05486	Sorghum	cytosol	55.77	56.96
CDX94046	Canola	nucleus	56.39	56.57
Bra038764.1-P	Field mustard	nucleus	55.97	56.39
Os02t0639000-01	Rice	cytosol	55.56	56.38
CDX98696	Canola	nucleus	55.03	56.33
GSMUA_Achr11P...	Banana	nucleus	54.72	56.31
HORVU6Hr1G060230.12	Barley	nucleus	54.82	56.12
AT4G21670.1	Thale cress	nucleus	56.81	56.05
Bra020905.1-P	Field mustard	cytosol	49.58	55.84
Os04t0529500-02	Rice	extracellular	54.3	55.52
CDX76438	Canola	cytosol	49.16	55.37
CDY31421	Canola	cytosol	48.53	55.25
HORVU2Hr1G091030.9	Barley	endoplasmic reticulum, vacuole	51.47	55.11
TraesCS6A01G235300.4	Wheat	nucleus	54.3	55.05
TraesCS6D01G218000.3	Wheat	nucleus	54.3	54.99
TraesCS6B01G264000.3	Wheat	nucleus	54.19	54.88
TraesCS2A01G373400.3	Wheat	nucleus	54.51	54.85
KXG26770	Sorghum	nucleus	53.98	54.67
Zm00001d017373_P001	Maize	nucleus	54.61	54.16
Zm00001d051242_P002	Maize	cytosol, nucleus, plastid	52.83	53.79
TraesCS2B01G390500.3	Wheat	nucleus	52.62	52.9
TraesCS2D01G369600.4	Wheat	nucleus	52.31	52.64
GSMUA_Achr11P...	Banana	extracellular	10.06	52.46
CDX79083	Canola	nucleus	46.86	52.04
Bra013546.1-P	Field mustard	nucleus	45.91	49.89
Solyc09g014440.2.1	Tomato	cytosol	37.32	44.06

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	InterPro:FCP1_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004647	GO:GO:0004721	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006464
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008420
GO:GO:0009058	GO:GO:0009611	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009738
GO:GO:0009987	GO:GO:0016591	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	GO:GO:0045892
GO:GO:0070940	InterPro:HAD-like_sf	InterPro:IPR004274	InterPro:IPR014720	UniProt:K4B979	PFAM:PF00035
PFAM:PF03031	PFscan:PS50137	PFscan:PS50969	PANTHER:PTHR23081	PANTHER:PTHR23081:SF17	SMART:SM00358
SMART:SM00577	SUPFAM:SSF54768	SUPFAM:SSF56784	EnsemblPlantsGene:Solyc02g078550.2	EnsemblPlants:Solyc02g078550.2.1	UniParc:UPI00027682B8
InterPro:dsRBD_dom	:	:	:	:	:

Description

RNA polymerase II C-terminal domain phosphatase-like 1 [Source:Projected from Arabidopsis thaliana (AT4G21670) UniProtKB/Swiss-Prot;Acc:Q5YDB6]

Coordinates

chr2:-:43208384..43218479

Molecular Weight (calculated)

106893.0 Da

IEP (calculated)

6.567

GRAVY (calculated)

-0.450

Length

954 amino acids

Sequence
(BLAST)

001: MFKSTVLLYE GERLVGEVEM YGEKGVVWGE KLIRISHYSP SSERCPPLAV LHTVTTGLSF KLEPTKSKPL TQDSPLTLLH STCLRDNKTA VMSLGREELH
101: LVAMQSKNIG GQCPCFWGFK VASGLYDSCL TMLNLRCLGI VFDLDETLIV ANTMRSFEDR IEALQRKINS ESDPQRASVM LAEVKRYQED KIILKQYAEN
201: DQVVDNGKVI RSQSEVFPAL SDNHQPIVRP LIRLQDRNII LTRINPMIRD TSVLVRLRPA WEDLRSYLTA RGRKRFEVYV CTMAERDYAL EMWRLLDPDS
301: NLINSQELLD RIVCVKSGLR KSLFNVFQDG NCHPKMALVI DDRLKVWDDK DQPRVHVVPA FAPYFAPQAE GNNSVPVLCV ARNVACNVRG GFFKDFDEGL
401: LQRISEVAYE DDIKQVPSAP DVSNYLISED DPSAVNGNKD SLGFDGMADS EVERRLKEAM LASTSVPSQM TNLDPRLVPA LQYPVPPVIS QPSIQGPVVP
501: FPTQHLPQVT SVLKSSVTQI SPQDTSLQSS PAREEGEVPE SELDPDTRRR LLILQHGQDT RDQVSSEPKF PIGTPLQVSV PPRVQPHGWF PAEEEVSPRQ
601: LNRPLPPKEF PLNPESMHIN KHRPPHPPFL PKMETSMPSD RVFFENQRLP KEVIPRDDRM RFSQSQPSFR PPGEDVSLGR SSSSNRVLDL DPGHYDPYLD
701: TPAGALQDIA FKCGVKVEFR SSFLSSPELQ FCLEVLFAGE KVGEGIGRTR REAQRHAAEE SLMYLADKYL SCIKADSSST QGDGFRFPNA SDNGFVENMS
801: PFGYQDRVSH SFASEPPRVL DPRLEVFKKS VGSVGALREL CAIEGLGLAF QTQPQLSVNP GQKSEIYAQV EIDGQVFGKG IGPTWDDAKT QAAERALVAL
901: KSELAQFSHK RQGSPRSLQQ QGFSNKRLKP EYSRGVQQRV PLSGRFPKNT SAMP

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.