Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g078550.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26730.1 | Solyc02g078550.2.1 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71433 | Canola | extracellular | 9.56 | 34.33 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 44.07 | 29.08 |
| KRG94698 | Soybean | nucleus, plastid | 39.92 | 25.7 |
| CDY28532 | Canola | nucleus, plastid | 37.63 | 24.9 |
| KRH06829 | Soybean | nucleus | 36.17 | 24.65 |
| CDY48977 | Canola | nucleus, plastid | 37.42 | 24.59 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 37.84 | 24.04 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 36.38 | 24.01 |
| AT3G26730.1 | Thale cress | plastid | 38.46 | 23.96 |
| Os02t0516600-01 | Rice | nucleus, plastid | 37.01 | 23.92 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 35.76 | 23.31 |
| TraesCS5D01G139400.2 | Wheat | plastid | 35.55 | 23.3 |
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 35.55 | 23.23 |
| EES06877 | Sorghum | nucleus | 35.76 | 23.18 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 36.8 | 22.81 |
| HORVU5Hr1G043380.1 | Barley | plastid | 34.72 | 22.3 |
Protein Annotations
| EnsemblPlants:Solyc02g094510.2.1 | EnsemblPlantsGene:Solyc02g094510.2 | SEG:seg | UniParc:UPI0002768C74 | UniProt:K4BDP6 | MapMan:35.2 |
Description
No Description!
Coordinates
chr2:-:55019639..55033594
Molecular Weight (calculated)
52739.4 Da
IEP (calculated)
10.013
GRAVY (calculated)
-0.772
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MSILPSHSDN HTTSSSSSSS SPNPNSNHGS KSKQQQQQQP DNFSGNMATA ASTSGGSSKK VNNSGSSRES SRHHNSDIIS LHGQGKPART NDPSSGRDQF
101: GFNSPQGVVT RSASRRTQMR KTYWNRQHIA VQNSKSDEDN RLEKCSYSSQ RLESVQVHSA GQSTHVMPYS NPADKPILQE KSTLNKVVRD SHLIQASDVE
201: SIEERVGSSL SLYGNDKSLQ KDTSGITDRE EISSYSFYQA VDGQHLILHP LNMKCLLHYY GGYGGLPNRI SGKILQMESV TQSEAMRRRY RFLSHFSLTT
301: TFQLCEIDLS KIMPMDALSP FMEEIRSREK QRTWLARKER REQVKAEAIG MYLEPLPFSF SEPSFTEQPT FTSNDFEALG STSVTVTSSS SPVPGGRQLF
401: SNVARLGFAA GCDPPALKMD ESARGSSVAA GTRSPGILSF ANVTSKAKAV EGPNASKSND AGKRGKKPNR ILMSTSGGRR Y
101: GFNSPQGVVT RSASRRTQMR KTYWNRQHIA VQNSKSDEDN RLEKCSYSSQ RLESVQVHSA GQSTHVMPYS NPADKPILQE KSTLNKVVRD SHLIQASDVE
201: SIEERVGSSL SLYGNDKSLQ KDTSGITDRE EISSYSFYQA VDGQHLILHP LNMKCLLHYY GGYGGLPNRI SGKILQMESV TQSEAMRRRY RFLSHFSLTT
301: TFQLCEIDLS KIMPMDALSP FMEEIRSREK QRTWLARKER REQVKAEAIG MYLEPLPFSF SEPSFTEQPT FTSNDFEALG STSVTVTSSS SPVPGGRQLF
401: SNVARLGFAA GCDPPALKMD ESARGSSVAA GTRSPGILSF ANVTSKAKAV EGPNASKSND AGKRGKKPNR ILMSTSGGRR Y
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.