CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH50009

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26730.1	KRH10835	AT4G21670.1	18541146
AT3G26730.1	KRH20483	AT4G21670.1	18541146
AT3G26730.1	KRH21480	AT4G21670.1	18541146
AT3G26730.1	KRH50009	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94698	Soybean	nucleus, plastid	88.67	83.8
VIT_14s0068g01130.t01	Wine grape	plastid	55.67	53.91
CDX71433	Canola	extracellular	9.07	47.76
CDY48977	Canola	nucleus, plastid	49.29	47.54
CDY28532	Canola	nucleus, plastid	48.58	47.18
Bra032944.1-P	Field mustard	nucleus, plastid	49.01	45.71
GSMUA_Achr6P20560_001	Banana	extracellular, golgi	47.03	45.54
TraesCS5D01G139400.2	Wheat	plastid	46.46	44.69
Os02t0516600-01	Rice	nucleus, plastid	47.03	44.62
AT3G26730.1	Thale cress	plastid	48.58	44.43
TraesCS5A01G135100.1	Wheat	nucleus, plastid	46.32	44.31
TraesCS5B01G133900.2	Wheat	nucleus, plastid	46.18	44.29
HORVU5Hr1G043380.1	Barley	plastid	45.75	43.12
EES06877	Sorghum	nucleus	44.9	42.72
Zm00001d016602_P001	Maize	nucleus, plastid	44.9	40.85
Solyc02g094510.2.1	Tomato	nucleus, plastid	24.65	36.17

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A0R0FLJ5	EMBL:ACUP02009889	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G048700
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH06829
ProteinID:KRH06829	ProteinID:KRH06829.1	PFAM:PF00097	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR12983
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0006EDAF2F	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:4677004..4684708

Molecular Weight (calculated)

78638.6 Da

IEP (calculated)

7.542

GRAVY (calculated)

-0.607

Length

706 amino acids

Sequence
(BLAST)

001: MVVRCLIQLF LKRGLEGSSA SAAQDSGGSS EKVTEVGSPS GVMVSPQQNS RTGSRSHGGR RTGMGTGTAS YHRNQQTPGS VHSHGSAPSA GRKAQTVNGN
101: YLLNFQYDPI SRSQPRGPPP PPTTTRRHRK RKPYNKDLFL QANYKFMVLG LGNYSPESMD PDKMLQWEDI ICVTYLTPFS VQCPICLEYP MCPQITTCGH
201: IFCFPCILQY LLMGEEDHKG DSWKRCPLCF VMISAKDLYT LHITNVKQYQ VGDNVEFTFL TRKKDSFTLS LKNKRETNTT SGVDGDICDP FSKFTLISDV
301: DLSVKHAISD LDGWLARADS GLVDDLEKLP YVCAAMQQLE QRKRYWSEHR SHDSEKSSMI IDCGHQIPST VANSMDTDDE NCSNGSITSS SDFLDQNKVM
401: MLDKSTAGAC SDQNLDVEKE LIEQEMNLSS SYEEKNDNQR HSEGVIGDVK ENSSYSFYQA ADGQHLILHP LNMKCLLHHY GSYDMLPHRI SGRILQLETV
501: TQTEAIRRRY RFLSHFPLTT TFQLCEVDLS EMLPPEALAP FIDEIKKRAN QRKQLAKKEK KEKIKAEATA AYSLPISLSH QFTSRDDPPT FSMDDFEALG
601: NSTISSSPPL AGERKSFSNV TRLGFAAAHD SPSLQIQETS GLHNNNRTSD SSVSTGLRNG ETQSYSNVIS RAESNISSNA PKTNELGKKG KKPNRVLLST
701: AGGRRY

Best Arabidopsis Sequence Match ( AT3G26730.1 )
(BLAST)

001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY

Arabidopsis Description

Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.