Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G091030.9 | |
| HORVU6Hr1G060230.12 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26730.1 | HORVU2Hr1G091030.9 | AT4G21670.1 | 18541146 |
| AT3G26730.1 | HORVU6Hr1G060230.12 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 90.65 | 92.26 |
| TraesCS5D01G139400.2 | Wheat | plastid | 90.39 | 92.23 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 90.25 | 91.6 |
| Os02t0516600-01 | Rice | nucleus, plastid | 68.36 | 68.82 |
| EES06877 | Sorghum | nucleus | 66.76 | 67.39 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 66.49 | 64.18 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 45.66 | 46.91 |
| KRH06829 | Soybean | nucleus | 43.12 | 45.75 |
| KRG94698 | Soybean | nucleus, plastid | 44.33 | 44.44 |
| CDY28532 | Canola | nucleus, plastid | 41.52 | 42.78 |
| CDY48977 | Canola | nucleus, plastid | 41.79 | 42.76 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 41.39 | 42.52 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 41.92 | 41.48 |
| AT3G26730.1 | Thale cress | plastid | 41.12 | 39.9 |
| CDX71433 | Canola | extracellular | 6.94 | 38.81 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 22.3 | 34.72 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G043380.1 | EnsemblPlantsGene:HORVU5Hr1G043380 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| PANTHER:PTHR12983 | PFAM:PF00097 | PFscan:PS50089 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000B470861 | UniProt:A0A287QZE5 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr5H:-:334525345..334538194
Molecular Weight (calculated)
82398.3 Da
IEP (calculated)
7.944
GRAVY (calculated)
-0.481
Length
749 amino acids
Sequence
(BLAST)
(BLAST)
001: RCPPSPPTKF THELPRGFMS ISPTESTRGS HPPAPRASNP SPSHGTAPRR GSRSSTRASA AALGAGMDGA STDSVGFIGQ SVDTSQAVVG FRISGEEDDP
101: YAQEVSDVSV SQSSGQGSLG LTVHSGGSVQ ADVQRLELAG SLEIHHHSDG LQGNGALMAS RKNQAVNANY LLNFQYDPIS RLQPHGPRTY PPRRQRKIKP
201: YNKDLFLQAN FKFVVLDTGN YQIDSMDPDK MLQWEDIICV RYCSPSEVRC PICLESPLCP QITSCGHIYC FPCILHYLLM GKEDYKGDCW KKCPLCFMMI
301: SAKELTTIFV TQLQHFHIGD NVTFALLGRS KNSLTPSLRN SSSEISSIDE DPCNVFSKFI LTSDVELSVR GAKSDLSNWL QMADLGLVDD LEKLPYVSAA
401: LEQLEERMKY WSEFRYYSSS PPLKNSFSSI SSNKLKNFGN PKTSHANSGH KLSPVSDGDI ITGVSGLSVS PRKINSNKGV PQKMEERRAA SVDSNEQDLY
501: TFYQVIDGQH LILHPLNMKC LLNHFGNSDT LPPRVTGKIL ELETITQSEA SRKRYRFLSH FSLTTTFQFC EIDLSDMLPP ISLAPFMDEI KRREKQRVQT
601: AKKEEKDRVK AEVAAAAQES AMRFEYTNFS RTQSDVMFSL DDFEALGNNA GPSTSPPASE RKLFSDVTRL GFASAQDSPP LRAETGDTNN EITRDQGPVA
701: ASSMSFASIL SSTRAAADSR GEMPKPNGVG KAGKKRTKVL LSTGGGRRY
101: YAQEVSDVSV SQSSGQGSLG LTVHSGGSVQ ADVQRLELAG SLEIHHHSDG LQGNGALMAS RKNQAVNANY LLNFQYDPIS RLQPHGPRTY PPRRQRKIKP
201: YNKDLFLQAN FKFVVLDTGN YQIDSMDPDK MLQWEDIICV RYCSPSEVRC PICLESPLCP QITSCGHIYC FPCILHYLLM GKEDYKGDCW KKCPLCFMMI
301: SAKELTTIFV TQLQHFHIGD NVTFALLGRS KNSLTPSLRN SSSEISSIDE DPCNVFSKFI LTSDVELSVR GAKSDLSNWL QMADLGLVDD LEKLPYVSAA
401: LEQLEERMKY WSEFRYYSSS PPLKNSFSSI SSNKLKNFGN PKTSHANSGH KLSPVSDGDI ITGVSGLSVS PRKINSNKGV PQKMEERRAA SVDSNEQDLY
501: TFYQVIDGQH LILHPLNMKC LLNHFGNSDT LPPRVTGKIL ELETITQSEA SRKRYRFLSH FSLTTTFQFC EIDLSDMLPP ISLAPFMDEI KRREKQRVQT
601: AKKEEKDRVK AEVAAAAQES AMRFEYTNFS RTQSDVMFSL DDFEALGNNA GPSTSPPASE RKLFSDVTRL GFASAQDSPP LRAETGDTNN EITRDQGPVA
701: ASSMSFASIL SSTRAAADSR GEMPKPNGVG KAGKKRTKVL LSTGGGRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.