Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G235300.4 | Wheat | nucleus | 96.14 | 95.22 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 96.14 | 95.12 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 95.92 | 94.9 |
| Zm00001d029743_P001 | Maize | cytosol | 11.7 | 94.78 |
| Os02t0639000-01 | Rice | cytosol | 85.41 | 84.68 |
| EES05486 | Sorghum | cytosol | 83.91 | 83.73 |
| Zm00001d017373_P001 | Maize | nucleus | 82.08 | 79.52 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 79.18 | 78.76 |
| GSMUA_Achr11P... | Banana | cytosol | 3.0 | 71.79 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 65.99 | 69.02 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 61.91 | 60.8 |
| GSMUA_Achr11P... | Banana | nucleus | 59.98 | 60.3 |
| PGSC0003DMT400057635 | Potato | nucleus | 52.25 | 55.28 |
| Solyc02g078550.2.1 | Tomato | nucleus | 56.12 | 54.82 |
| GSMUA_Achr11P... | Banana | extracellular | 10.73 | 54.64 |
| KRH50009 | Soybean | nucleus | 55.79 | 54.39 |
| KRH20483 | Soybean | nucleus | 55.79 | 54.17 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 45.6 | 53.93 |
| KRH10835 | Soybean | nucleus | 54.08 | 52.61 |
| KRH21480 | Soybean | nucleus | 53.22 | 51.67 |
| Bra020905.1-P | Field mustard | cytosol | 45.71 | 50.3 |
| CDX76438 | Canola | cytosol | 45.49 | 50.06 |
| CDY31421 | Canola | cytosol | 44.96 | 50.0 |
| CDX98696 | Canola | nucleus | 49.68 | 49.68 |
| Bra038764.1-P | Field mustard | nucleus | 50.32 | 49.52 |
| CDX94046 | Canola | nucleus | 49.89 | 48.9 |
| AT4G21670.1 | Thale cress | nucleus | 50.64 | 48.81 |
| CDX79083 | Canola | nucleus | 42.92 | 46.57 |
| Bra013546.1-P | Field mustard | nucleus | 42.17 | 44.76 |
| VIT_00s0370g00030.t01 | Wine grape | nucleus, plastid | 7.51 | 43.75 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | UniProt:A0A287UCW1 | InterPro:FCP1_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0070940 | InterPro:HAD-like_sf | EnsemblPlantsGene:HORVU6Hr1G060230 | EnsemblPlants:HORVU6Hr1G060230.12 | InterPro:IPR004274 |
| InterPro:IPR014720 | PFAM:PF00035 | PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 |
| PANTHER:PTHR23081:SF11 | SMART:SM00358 | SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI000B475172 |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:400155125..400165684
Molecular Weight (calculated)
103572.0 Da
IEP (calculated)
5.926
GRAVY (calculated)
-0.438
Length
932 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSMVYYGN TSIGEVEVWP KGDTNLGAAA WAREIRVDRL SPPSERCLPL AVMHTVAVGA RCLVMESRPP TADEPPPPLV AMHAACLRDN KTAVVPLGEE
101: ELHLVAMTSR RNLMNHACFW GYKVPFGLYN SCLTMLNLRC LGIVFDLDET LIVANTTRSF EDRIDSLQRK LSNETDPQRM NGMLAEIKRY QDDKSILKQY
201: IEGDQVYDDG KMYKVQPEIV PPLSDNHQSL TRPVIRLQEK NIILTRINPL IRDTSVLVRL RPAWEDLRSY LIARGRKRFE VYVCTMAERD YALEMWRLLD
301: PDSKLINSVQ LSDRMVCVKS GLKKSLLNVF HDGSCHPGMA LVIDDRLKVW DEKDQSRVHV VPAFTPYYAP QAEANCSIPV LCVARNVACN VRGGFFKDFD
401: EGLLPRITSV LYEDEIQDIS SAPDVGNYLI SEDENVAVVN GNRDSLAFDG MADAEVERRM KEASGSGSAL NPTMANLVMP VAPSQSFVPS SVAPFAPPLG
501: MMPLSNNQVP PPPFSQPVVQ PGLLDPLQAS PGREEGEVPE SELDPDTRRR LLILQHGQDT RDPTPPLPAV PPVQVSVPPV QSHGNWFPVE DGMNSNNSNR
601: GSAGFPSESD TMHFDEKQPP HPSYFHGGDN NLVSSDRFSY QSQRFPSQVA HTEDHRMLQN NVPPRYRSFP GQRNNLIESG QSYARNVGTS VGILEEIALK
701: SGSKVEYRST LCDTAELQFS IEVWIVGEKV GEGIGSTRKE AQRQAAEISL RNLANKYLLS DPNKMTDVNE DGFGSNPNFF GYSENTRNDM LQVASTSEES
801: RFMKTGESNS RITGGSIAAL KQLCTVEGYN LVFQARPSPL DGSGGKETYA QVEVGGQTLG KGIGITWEEA KLQAADEALG TLRSMLGQLS QKRSISPRSL
901: APNYNKRFKP DFPRVVHRPP YGRYSRIEGR VP
101: ELHLVAMTSR RNLMNHACFW GYKVPFGLYN SCLTMLNLRC LGIVFDLDET LIVANTTRSF EDRIDSLQRK LSNETDPQRM NGMLAEIKRY QDDKSILKQY
201: IEGDQVYDDG KMYKVQPEIV PPLSDNHQSL TRPVIRLQEK NIILTRINPL IRDTSVLVRL RPAWEDLRSY LIARGRKRFE VYVCTMAERD YALEMWRLLD
301: PDSKLINSVQ LSDRMVCVKS GLKKSLLNVF HDGSCHPGMA LVIDDRLKVW DEKDQSRVHV VPAFTPYYAP QAEANCSIPV LCVARNVACN VRGGFFKDFD
401: EGLLPRITSV LYEDEIQDIS SAPDVGNYLI SEDENVAVVN GNRDSLAFDG MADAEVERRM KEASGSGSAL NPTMANLVMP VAPSQSFVPS SVAPFAPPLG
501: MMPLSNNQVP PPPFSQPVVQ PGLLDPLQAS PGREEGEVPE SELDPDTRRR LLILQHGQDT RDPTPPLPAV PPVQVSVPPV QSHGNWFPVE DGMNSNNSNR
601: GSAGFPSESD TMHFDEKQPP HPSYFHGGDN NLVSSDRFSY QSQRFPSQVA HTEDHRMLQN NVPPRYRSFP GQRNNLIESG QSYARNVGTS VGILEEIALK
701: SGSKVEYRST LCDTAELQFS IEVWIVGEKV GEGIGSTRKE AQRQAAEISL RNLANKYLLS DPNKMTDVNE DGFGSNPNFF GYSENTRNDM LQVASTSEES
801: RFMKTGESNS RITGGSIAAL KQLCTVEGYN LVFQARPSPL DGSGGKETYA QVEVGGQTLG KGIGITWEEA KLQAADEALG TLRSMLGQLS QKRSISPRSL
901: APNYNKRFKP DFPRVVHRPP YGRYSRIEGR VP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.