Factsheet for VIT_00s0370g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g04550.t01
VIT_06s0009g01570.t01
VIT_07s0130g00040.t01
VIT_13s0101g00520.t01
VIT_14s0068g01130.t01
VIT_16s0098g01820.t01
VIT_18s0001g07670.t01
VIT_18s0001g14750.t01
VIT_18s0072g01030.t01
VIT_19s0014g03290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	VIT_18s0001g07670.t01	AT1G09700.1	23141542
AT4G21670.1	VIT_18s0001g14750.t01	AT1G20110.1	18541146
AT4G21670.1	VIT_07s0130g00040.t01	AT1G22640.1	18541146
AT4G21670.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088
AT4G21670.1	VIT_19s0014g03290.t01	AT1G52890.1	18541146
AT4G21670.1	VIT_06s0009g01570.t01	AT2G27100.1	23141542
AT4G21670.1	VIT_06s0004g04550.t01	AT2G28840.1	18541146
AT4G21670.1	VIT_14s0068g01130.t01	AT3G26730.1	18541146
AT4G21670.1	VIT_16s0098g01820.t01	AT3G49250.1	18541146
AT4G21670.1	VIT_13s0101g00520.t01	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029743_P001	Maize	cytosol	12.18	83.48
GSMUA_Achr11P...	Banana	cytosol	3.68	74.36
PGSC0003DMT400057635	Potato	nucleus	63.32	56.64
KRH50009	Soybean	nucleus	66.5	54.81
KRH20483	Soybean	nucleus	65.99	54.17
GSMUA_Achr11P...	Banana	extracellular	12.18	52.46
KRH10835	Soybean	nucleus	63.32	52.09
Solyc02g078550.2.1	Tomato	nucleus	62.56	51.68
KRH21480	Soybean	nucleus	62.31	51.15
Bra020905.1-P	Field mustard	cytosol	53.55	49.82
CDX76438	Canola	cytosol	52.92	49.23
CDY31421	Canola	cytosol	52.28	49.16
GSMUA_Achr11P...	Banana	nucleus	56.47	48.0
GSMUA_Achr8P14120_001	Banana	nucleus	57.49	47.73
AT4G21670.1	Thale cress	nucleus	57.49	46.85
CDX98696	Canola	nucleus	54.82	46.35
CDX94046	Canola	nucleus	55.46	45.95
Bra038764.1-P	Field mustard	nucleus	54.95	45.72
Os02t0639000-01	Rice	cytosol	54.44	45.64
HORVU6Hr1G060230.12	Barley	nucleus	53.93	45.6
TraesCS6D01G218000.3	Wheat	nucleus	54.06	45.22
TraesCS6B01G264000.3	Wheat	nucleus	53.93	45.12
TraesCS6A01G235300.4	Wheat	nucleus	53.81	45.06
EES05486	Sorghum	cytosol	52.92	44.65
KXG26770	Sorghum	nucleus	53.05	44.37
Os04t0529500-02	Rice	extracellular	51.78	43.73
TraesCS2A01G373400.3	Wheat	nucleus	52.16	43.35
Zm00001d017373_P001	Maize	nucleus	52.54	43.04
HORVU2Hr1G091030.9	Barley	endoplasmic reticulum, vacuole	48.35	42.76
CDX79083	Canola	nucleus	46.57	42.72
Zm00001d051242_P002	Maize	cytosol, nucleus, plastid	49.62	41.73
TraesCS2B01G390500.3	Wheat	nucleus	50.25	41.73
TraesCS2D01G369600.4	Wheat	nucleus	49.62	41.24
Bra013546.1-P	Field mustard	nucleus	45.3	40.66
VIT_08s0007g02130.t01	Wine grape	nucleus	43.02	39.74
VIT_00s0370g00030.t01	Wine grape	nucleus, plastid	0.13	0.62

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	ProteinID:CBI35690.3	UniProt:D7TYW3	InterPro:FCP1_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004647	GO:GO:0004721	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006464	GO:GO:0006470	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0008420	GO:GO:0009058	GO:GO:0009611	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009738	GO:GO:0009987	GO:GO:0016311	GO:GO:0016591	GO:GO:0016787
GO:GO:0016791	GO:GO:0019538	GO:GO:0045892	GO:GO:0070940	InterPro:HAD-like_sf	InterPro:IPR004274
PFAM:PF03031	PFscan:PS50969	PANTHER:PTHR23081	PANTHER:PTHR23081:SF17	SMART:SM00577	SUPFAM:SSF56784
TMHMM:TMhelix	UniParc:UPI0001BE4857	ArrayExpress:VIT_00s0370g00040	EnsemblPlantsGene:VIT_00s0370g00040	EnsemblPlants:VIT_00s0370g00040.t01	SEG:seg

Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:D7TYW3]

Coordinates

chrUn:-:26060601..26066184

Molecular Weight (calculated)

77319.0 Da

IEP (calculated)

5.860

GRAVY (calculated)

-0.401

Length

788 amino acids

Sequence
(BLAST)

001: MYKSIVYEGD DVVGEVEIYP QNQGLELMKE IRISHYSQPS ERCPPLAVLH TITSCGVCFK MESSKAQSQD TPLYLLHSTC IRENKTAVMS LGEEELHLVA
101: MYSKKKDGQY PCFWGFNVAL GLYSSCLVML NLRCLGIVFD LDETLIVANT MRSFEDRIDA LQRKINTEVD PQRISGMAAE VRRYQDDRNI LKQYAENDQV
201: VENGKLFKTQ PEIVPALSDN HQPIVRPLIR LQEKNIILTR INPLIRDTSV LVRLRPAWED LRSYLTARGR KRFEVYVCTM AERDYALEMW RLLDPESNLI
301: NSKELLDRIV CVKSGSRKSL FNVFQDGICH PKMALVIDDR LKVWDEKDQP RVHVVPAFAP YYAPQAEANN AISVLCVARN VACNVRGGFF KEFDEGLLQR
401: IPEISYEDDI KDIRSAPDVS NYLVSEDDAS VSNGNRDQPC FDGMADVEVE RKLKDAISAP STVTSLDPRL SPPLQFAVAA SSGLAPQPAA QGSIMPFSNK
501: QFPQSASLIK PLAPEPTMQS SPAREEGEVP ESELDPDTRR RLLILQHGQD TREHASSDPP FPVRPPIQVS VPRVQSRGSW FPADEEMSPR QLNRAVPKEF
601: PLDSDTMHIE KHRPHHPSFF HKVESSASSD RILHENQRLS KEVLHRDDRL RLNHSLPGYH SFSGEEVPLG RSSSNRDLDF EXXXXXXXXX XXXXXXXXXX
701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXL

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.