Factsheet for VIT_13s0101g00520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0370g00040.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	VIT_00s0370g00040.t01	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061575	Potato	cytosol	62.64	52.45
Solyc11g006830.1.1	Tomato	cytosol	62.27	52.15
KRG90752	Soybean	cytosol	61.54	50.91
KRH36010	Soybean	cytosol	60.07	50.15
KRH33267	Soybean	cytosol	56.41	44.77
CDY13198	Canola	plastid	47.25	44.64
Bra014824.1-P	Field mustard	plastid	52.75	44.17
CDX76154	Canola	plastid	52.75	44.17
AT3G54290.1	Thale cress	plastid	55.68	43.43
CDX73491	Canola	plastid	52.01	39.12
Bra007062.1-P	Field mustard	plastid	50.92	38.29
CDX78227	Canola	cytosol, plastid	50.55	37.81
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	45.79	36.55
TraesCS3A01G374300.1	Wheat	mitochondrion	30.4	33.2
Os01t0861700-00	Rice	plasma membrane	37.0	24.88
Zm00001d042764_P001	Maize	plastid	35.53	24.19
EES01796	Sorghum	mitochondrion, plastid	35.53	24.13
HORVU3Hr1G084020.2	Barley	plastid	34.8	23.34
Zm00001d012290_P001	Maize	cytosol	16.48	21.33

Protein Annotations

Gene3D:1.20.120.520	EntrezGene:100267160	wikigene:100267160	MapMan:35.2	EMBL:AM465520	ProteinID:CAN65843
ProteinID:CAN65843.1	ProteinID:CBI32220	ProteinID:CBI32220.3	UniProt:D7TNZ7	EMBL:FN596004	InterPro:Haemerythrin-like
InterPro:Hemerythrin-like_sf	EntrezGene:LOC100267160	wikigene:LOC100267160	PFAM:PF01814	PANTHER:PTHR35739	SUPFAM:SSF47188
UniParc:UPI0001BE3EA2	ArrayExpress:VIT_13s0101g00520	EnsemblPlantsGene:VIT_13s0101g00520	EnsemblPlants:VIT_13s0101g00520.t01	RefSeq:XP_002271335	RefSeq:XP_002271335.1

Description

No Description!

Coordinates

chr13:-:12885034..12887046

Molecular Weight (calculated)

30882.3 Da

IEP (calculated)

5.772

GRAVY (calculated)

-0.362

Length

273 amino acids

Sequence
(BLAST)

001: MVSAETPILG PDTLVLQCGS DTVSGSRETL MRYIESRFPR PPLVMSRGGD CDETTPLIVT ATRLQHRSMT WHIERMVRWA EDLAARGGRG AVDPTVGSPR
101: MEVKKFGRSY GHLLELMLEH AQMEERIVFP ILERADRGLS KAANDDHARD LPIMNGIKED IKSIVVLDSG TPAYQEALSN LFTRLKSLQE HCKEHFDGEE
201: RDLLPLMEAA ELSKQQHERL LEQCWDAMQG THSHLFRFFI EGLPPHDAMS YLGLIIKCND KDRAATMLCP IME

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.