CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	CDX76438	AT4G21670.1	18541146
AT3G54290.1	CDX79083	AT4G21670.1	18541146
AT3G54290.1	CDX94046	AT4G21670.1	18541146
AT3G54290.1	CDX98696	AT4G21670.1	18541146
AT3G54290.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76154	Canola	plastid	88.93	78.83
AT3G54290.1	Thale cress	plastid	80.62	66.57
CDX73491	Canola	plastid	80.28	63.91
CDX78227	Canola	cytosol, plastid	78.89	62.47
VIT_13s0101g00520.t01	Wine grape	cytosol	44.64	47.25
KRH36010	Soybean	cytosol	52.6	46.48
Solyc11g006830.1.1	Tomato	cytosol	51.56	45.71
PGSC0003DMT400061575	Potato	cytosol	51.56	45.71
KRG90752	Soybean	cytosol	51.56	45.15
KRH33267	Soybean	cytosol	46.71	39.24
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	40.14	33.92
TraesCS3A01G374300.1	Wheat	mitochondrion	21.45	24.8
Zm00001d012290_P001	Maize	cytosol	17.99	24.64
Os01t0861700-00	Rice	plasma membrane	31.49	22.41
HORVU3Hr1G084020.2	Barley	plastid	31.14	22.11
Zm00001d042764_P001	Maize	plastid	30.45	21.95
EES01796	Sorghum	mitochondrion, plastid	30.45	21.89

Protein Annotations

EnsemblPlants:CDY13198	EnsemblPlantsGene:GSBRNA2T00071082001	Gene3D:1.20.120.520	InterPro:Haemerythrin-like	PANTHER:PTHR35739	PFAM:PF01814
ProteinID:CDY13198	ProteinID:CDY13198.1	SEG:seg	UniParc:UPI0004EF21AC	UniProt:A0A078FLQ8	MapMan:35.2

Description

BnaC04g26370DBnaC04g26370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLQ8]

Coordinates

chrLK032032:-:391663..392785

Molecular Weight (calculated)

32749.7 Da

IEP (calculated)

8.009

GRAVY (calculated)

-0.431

Length

289 amino acids

Sequence
(BLAST)

001: MGNCLPNSTT KTTAEISPAT AKPTSAATVK LSGPPNSLAT SYLRFALLHK KVNLRFVPSE DQKPTIHVGA ETVSGSQEVL LRYIEDKFPE PRLMLWKFNL
101: EGFDEATPPI AKAIWLQHRS MLWHIERMVR WSEDLAARGG RRAVDPSVGT PKMEIRKFAK SYAQLQEIMV EHAQMEERIL FPVLESVDRG MCKSANEEHG
201: RELPMMNGIK EYIKSIGVMD SGACSEELFT LASRFNSLQQ MMCKAHFEEE EKDLLPMGRE KQNKLMNQSL ELMRGTPPHS FRTLQNLLS

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.