Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014824.1-P | Field mustard | plastid | 77.14 | 82.82 |
| CDX76154 | Canola | plastid | 76.86 | 82.52 |
| CDY13198 | Canola | plastid | 66.57 | 80.62 |
| CDX73491 | Canola | plastid | 78.57 | 75.76 |
| Bra007062.1-P | Field mustard | plastid | 78.0 | 75.21 |
| CDX78227 | Canola | cytosol, plastid | 78.0 | 74.79 |
| VIT_13s0101g00520.t01 | Wine grape | cytosol | 43.43 | 55.68 |
| KRH36010 | Soybean | cytosol | 51.14 | 54.74 |
| KRG90752 | Soybean | cytosol | 51.14 | 54.24 |
| Solyc11g006830.1.1 | Tomato | cytosol | 49.71 | 53.37 |
| PGSC0003DMT400061575 | Potato | cytosol | 49.43 | 53.07 |
| KRH33267 | Soybean | cytosol | 44.86 | 45.64 |
| GSMUA_Achr3P22630_001 | Banana | mitochondrion, plastid | 37.71 | 38.6 |
| TraesCS3A01G374300.1 | Wheat | mitochondrion | 24.29 | 34.0 |
| Os01t0861700-00 | Rice | plasma membrane | 33.43 | 28.82 |
| HORVU3Hr1G084020.2 | Barley | plastid | 33.43 | 28.75 |
| Zm00001d012290_P001 | Maize | cytosol | 17.14 | 28.44 |
| Zm00001d042764_P001 | Maize | plastid | 32.57 | 28.43 |
| EES01796 | Sorghum | mitochondrion, plastid | 32.57 | 28.36 |
Protein Annotations
| Gene3D:1.20.120.520 | MapMan:35.2 | EntrezGene:824596 | ProteinID:AEE79209.1 | ArrayExpress:AT3G54290 | EnsemblPlantsGene:AT3G54290 |
| RefSeq:AT3G54290 | TAIR:AT3G54290 | RefSeq:AT3G54290-TAIR-G | EnsemblPlants:AT3G54290.1 | TAIR:AT3G54290.1 | EMBL:AY093199 |
| EMBL:BT008834 | InterPro:Haemerythrin-like | RefSeq:NP_566997.1 | PFAM:PF01814 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR35739 |
| UniProt:Q8RWC0 | UniParc:UPI00000A63DD | SEG:seg | : | : | : |
Description
At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
Coordinates
chr3:-:20104352..20106215
Molecular Weight (calculated)
39449.9 Da
IEP (calculated)
5.907
GRAVY (calculated)
-0.249
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.