Factsheet for Os01t0861700-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0639000-01
Os04t0529500-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	Os02t0639000-01	AT4G21670.1	18541146
AT3G54290.1	Os04t0529500-02	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G374300.1	Wheat	mitochondrion	55.91	90.8
EES01796	Sorghum	mitochondrion, plastid	84.98	85.82
Zm00001d042764_P001	Maize	plastid	84.73	85.79
HORVU3Hr1G084020.2	Barley	plastid	85.22	85.01
Zm00001d012290_P001	Maize	cytosol	40.39	77.73
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	39.16	46.49
PGSC0003DMT400061575	Potato	cytosol	30.05	37.42
Solyc11g006830.1.1	Tomato	cytosol	30.05	37.42
VIT_13s0101g00520.t01	Wine grape	cytosol	24.88	37.0
KRG90752	Soybean	cytosol	28.57	35.15
KRH36010	Soybean	cytosol	28.08	34.86
KRH33267	Soybean	cytosol	28.57	33.72
AT3G54290.1	Thale cress	plastid	28.82	33.43
CDX76154	Canola	plastid	26.11	32.52
Bra014824.1-P	Field mustard	plastid	26.11	32.52
CDY13198	Canola	plastid	22.41	31.49
CDX78227	Canola	cytosol, plastid	27.59	30.68
Bra007062.1-P	Field mustard	plastid	27.34	30.58
CDX73491	Canola	plastid	26.35	29.48

Protein Annotations

EnsemblPlants:Os01t0861700-00	EnsemblPlantsGene:Os01g0861700	EntrezGene:4324739	Gene3D:1.20.120.520	InterPro:Haemerythrin-like	PANTHER:PTHR35739
PFAM:PF01814	ProteinID:BAD82039.1	ProteinID:BAD82586.1	ProteinID:BAS75343.1	ProteinID:EAZ14232.1	RefSeq:XP_015620886.1
SEG:seg	UniParc:UPI000049E950	UniProt:Q5N7H0	MapMan:35.2	:	:

Description

Haemerythrin motif-containing protein without RING- and Zn-finger 1Hypothetical conserved gene. (Os01t0861700-00)

Coordinates

chr1:+:37303624..37307696

Molecular Weight (calculated)

44379.4 Da

IEP (calculated)

8.483

GRAVY (calculated)

-0.356

Length

406 amino acids

Sequence
(BLAST)

001: MGNCSPSPRR RGRPTSPSGS PPLDRTPSAK AAGGGATTTV SPYALARSPS VSAAEADGDD GVVRVYGSDG CPVAWRVRVA LLYKAAAPVH FTPSEAAPLG
101: RPVLRLSASD PELCGTADEL LRHVDARFEG KPLVTPPERP ARVSAAAAAA EEVAELVRLQ HRSAERHLEG VAAKVAEMVK KGAKKAGKGA KVVVVEGAEV
201: RRLGKWYGDA MEVMLEHARM EETVLFPDIQ RASFPGVLDK ANEQHGRHLP MMNGIKEDIK TLLTLELGSS LFQEVLVNLS VRLKALQDHT KEHFKEEERE
301: LLPRLEGVRR MQREEGNVSD KSNTAWASEA MGTMEMTHSK LFPFFMTGLL PQEAMQYLDL VCRCTKNTRH LVSMLRSLAE RLEDANPAII HNNPTKLYEH
401: LLVKSP

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.