Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017373_P001 | |
| Zm00001d029743_P001 | |
| Zm00001d051242_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54290.1 | Zm00001d017373_P001 | AT4G21670.1 | 18541146 |
| AT3G54290.1 | Zm00001d029743_P001 | AT4G21670.1 | 18541146 |
| AT3G54290.1 | Zm00001d051242_P002 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042764_P001 | Maize | plastid | 83.89 | 44.14 |
| EES01796 | Sorghum | mitochondrion, plastid | 83.89 | 44.03 |
| Os01t0861700-00 | Rice | plasma membrane | 77.73 | 40.39 |
| HORVU3Hr1G084020.2 | Barley | plastid | 75.83 | 39.31 |
| TraesCS3A01G374300.1 | Wheat | mitochondrion | 34.6 | 29.2 |
| GSMUA_Achr3P22630_001 | Banana | mitochondrion, plastid | 34.6 | 21.34 |
| KRG90752 | Soybean | cytosol | 30.81 | 19.7 |
| KRH36010 | Soybean | cytosol | 30.33 | 19.57 |
| PGSC0003DMT400061575 | Potato | cytosol | 27.96 | 18.1 |
| Solyc11g006830.1.1 | Tomato | cytosol | 27.96 | 18.1 |
| CDY13198 | Canola | plastid | 24.64 | 17.99 |
| KRH33267 | Soybean | cytosol | 27.96 | 17.15 |
| AT3G54290.1 | Thale cress | plastid | 28.44 | 17.14 |
| CDX76154 | Canola | plastid | 25.59 | 16.56 |
| Bra014824.1-P | Field mustard | plastid | 25.59 | 16.56 |
| VIT_13s0101g00520.t01 | Wine grape | cytosol | 21.33 | 16.48 |
| CDX78227 | Canola | cytosol, plastid | 28.44 | 16.44 |
| Bra007062.1-P | Field mustard | plastid | 27.49 | 15.98 |
| CDX73491 | Canola | plastid | 26.54 | 15.43 |
Protein Annotations
| EnsemblPlants:Zm00001d012290_P001 | EnsemblPlants:Zm00001d012290_T001 | EnsemblPlantsGene:Zm00001d012290 | PANTHER:PTHR35739 | ProteinID:AQK99279.1 | SEG:seg |
| UniParc:UPI000843689B | UniProt:A0A1D6G803 | MapMan:35.2 | : | : | : |
Description
hemerythrin HHE cation-binding domain protein
Coordinates
chr8:-:171956973..171957721
Molecular Weight (calculated)
22576.2 Da
IEP (calculated)
8.216
GRAVY (calculated)
-0.132
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCSPSPSV STAAVDAEDG GVVRVYGSDG CPVAWRLRVS LLYKAAAPLH FTPSEAAPLG RPVLRLSAAD PEVCGTPDEL LRQVDARFEG KPRVAPPERP
101: RTGSPSAAAA AAAEVAELVR LQHRSAERHL EGVAAKVVEM VKKGKKSGKG RSVVEGAEVR SLGKWYGDAM EVMLEHARME ETLIFPDIQR ASFPGRLGFD
201: LIYLCRIALC S
101: RTGSPSAAAA AAAEVAELVR LQHRSAERHL EGVAAKVVEM VKKGKKSGKG RSVVEGAEVR SLGKWYGDAM EVMLEHARME ETLIFPDIQR ASFPGRLGFD
201: LIYLCRIALC S
001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD
Arabidopsis Description
At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.