CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	CDX76438	AT4G21670.1	18541146
AT3G54290.1	CDX79083	AT4G21670.1	18541146
AT3G54290.1	CDX94046	AT4G21670.1	18541146
AT3G54290.1	CDX98696	AT4G21670.1	18541146
AT3G54290.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007062.1-P	Field mustard	plastid	96.71	97.25
CDX73491	Canola	plastid	95.34	95.87
CDX76154	Canola	plastid	73.15	81.9
CDY13198	Canola	plastid	62.47	78.89
AT3G54290.1	Thale cress	plastid	74.79	78.0
Solyc11g006830.1.1	Tomato	cytosol	45.21	50.61
VIT_13s0101g00520.t01	Wine grape	cytosol	37.81	50.55
KRH36010	Soybean	cytosol	45.21	50.46
PGSC0003DMT400061575	Potato	cytosol	44.93	50.31
KRG90752	Soybean	cytosol	45.21	50.0
KRH33267	Soybean	cytosol	43.01	45.64
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	35.34	37.72
TraesCS3A01G374300.1	Wheat	mitochondrion	20.82	30.4
Zm00001d012290_P001	Maize	cytosol	16.44	28.44
Os01t0861700-00	Rice	plasma membrane	30.68	27.59
HORVU3Hr1G084020.2	Barley	plastid	29.04	26.04
Zm00001d042764_P001	Maize	plastid	28.49	25.94
EES01796	Sorghum	mitochondrion, plastid	28.49	25.87

Protein Annotations

EnsemblPlants:CDX78227	EnsemblPlantsGene:GSBRNA2T00129549001	Gene3D:1.20.120.520	InterPro:Haemerythrin-like	PANTHER:PTHR35739	PFAM:PF01814
ProteinID:CDX78227	ProteinID:CDX78227.1	SEG:seg	UniParc:UPI0004EF32CC	MapMan:35.2	:

Description

BnaA09g34220D

Coordinates

chrLK031814:-:1859385..1860787

Molecular Weight (calculated)

40910.6 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.281

Length

365 amino acids

Sequence
(BLAST)

001: MGNCFSTSSV STAEISPLDL AVKPPPVAVA SPAAGAQTHL PAPPPRLPIP PPSAKETTAT ATATSTVTVK LYGPSNSLTT SYLRFALLHK RVNLRFVPSE
101: DQKPTIQIGS EKTSGTQDAL LRYIEEKFPE PRLMIWKFNL EGFDEATPPV VKTIWLQHRS MTWHVERMLR WSEDLAARGG RRAVDPSVGT PKMEIRKFAK
201: SYTQLQEMML EHAQMEERVL FPVLESVDRG MCKSASAEHG RELPLMNGIK EYIKSIAVMD SGICSEELFS LASRFKSLQM MCKAHFEEEE KELLPMVEAA
301: EMGKEKQKKL MNQGLEVMRG THTNVFDFLL QGLTPQEAMQ YLDLLMNFAD PDLISSFMCQ RDIVD

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.