Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98696 | Canola | nucleus | 88.64 | 90.45 |
| CDY31421 | Canola | cytosol | 70.87 | 80.43 |
| CDX76438 | Canola | cytosol | 71.5 | 80.28 |
| AT4G21670.1 | Thale cress | nucleus | 79.5 | 78.18 |
| Zm00001d029743_P001 | Maize | cytosol | 9.04 | 74.78 |
| CDX79083 | Canola | nucleus | 65.19 | 72.18 |
| GSMUA_Achr11P... | Banana | cytosol | 2.63 | 64.1 |
| KRH50009 | Soybean | nucleus | 58.68 | 58.37 |
| KRH20483 | Soybean | nucleus | 58.25 | 57.71 |
| PGSC0003DMT400057635 | Potato | nucleus | 53.0 | 57.21 |
| KRH10835 | Soybean | nucleus | 57.52 | 57.1 |
| Solyc02g078550.2.1 | Tomato | nucleus | 56.57 | 56.39 |
| KRH21480 | Soybean | nucleus | 56.78 | 56.25 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 45.95 | 55.46 |
| GSMUA_Achr11P... | Banana | nucleus | 49.53 | 50.81 |
| Os02t0639000-01 | Rice | cytosol | 50.16 | 50.74 |
| EES05486 | Sorghum | cytosol | 49.53 | 50.43 |
| GSMUA_Achr11P... | Banana | extracellular | 9.67 | 50.27 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 50.05 | 50.16 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 46.9 | 50.06 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 48.9 | 49.89 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 49.63 | 49.79 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 49.0 | 49.47 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 48.69 | 49.2 |
| Zm00001d017373_P001 | Maize | nucleus | 49.74 | 49.17 |
| Os04t0529500-02 | Rice | extracellular | 48.16 | 49.09 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 48.58 | 49.04 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 48.48 | 48.63 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 48.48 | 48.58 |
| KXG26770 | Sorghum | nucleus | 48.05 | 48.51 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 47.0 | 47.71 |
| CDX80779 | Canola | nucleus | 33.54 | 40.38 |
| CDY11208 | Canola | nucleus | 33.12 | 39.87 |
| CDX81142 | Canola | cytosol | 8.1 | 37.75 |
| CDX81143 | Canola | extracellular, plasma membrane, plastid | 5.78 | 31.07 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | EnsemblPlants:CDX94046 | ProteinID:CDX94046 | ProteinID:CDX94046.1 |
| InterPro:FCP1_dom | EnsemblPlantsGene:GSBRNA2T00156937001 | InterPro:HAD-like_sf | InterPro:IPR004274 | InterPro:IPR014720 | PFAM:PF00035 |
| PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SMART:SM00358 |
| SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI0004EDBF49 | InterPro:dsRBD_dom | SEG:seg |
Description
BnaC07g36800D
Coordinates
chrLK031879:+:299897..305045
Molecular Weight (calculated)
106678.0 Da
IEP (calculated)
5.976
GRAVY (calculated)
-0.550
Length
951 amino acids
Sequence
(BLAST)
(BLAST)
001: MYNSDRVQVY HEDVRVGEME IYPPPREPGD DVQRKKKQRE VMEQVKIGIR IGRFSQPSER CPPLSVLTTV SSCGLCFKLE APASSTAQEP LTLLHSSCLT
101: DNKTAVMSLG EEELHLVAMY SENINNDRPC FWAFTVASGI YDSCLVMLNL RCLGIVFDLD ETLVVANTTR TFDDKIEALQ RRINNEMDPQ RIAVMVAEMK
201: RYQDDKVLLK QYVESDQVVE NGEVIKVQSE IVPALSDNHQ PLVRPLIRLP EKNIILTRIN PMVRDTSVLV RMRPSWEELR SYLTAKGRKR FEVYVCTMAE
301: RDYALEMWRL LDPEGNLINA NDLLSRIVCV KAGFKKSLFN VFLDATCHPK MALVIDDRLK VWDEKDQPRV YVVPAFAPYY SPQAEAAATP VLCVTRNVAC
401: GVRGGFFRDF DDSLLQRIAQ ISYENDVEDI PSPPDVSHYL VSEDDSSGLN GNKDPLAFDG MADAEVERRM KEAISGSSVV LPAANIDPRI AAPVQYPMAS
501: ALSVPAPVPV PVVQQPSAMA FPSTQFQQPT SIAKHLVPSE PSLQSSPARE EGEVPESELD PDTRRRLLIL QHGQDTRDAT PSEPPFPQRP PVQAPPTPHV
601: QPRNGWFPVE EEMDPAPLRR TASKEYPLDS ESLNRPRHQS FYPKIENSTT QSDRMPHENR RLPKEPLRRD EQLRSNNNPP GSHPFYGEES SWNQSSSRNS
701: DIDFIPGRSV SATENPAEVL HQIAIKCGSK VDYKPGLVAS TDLRFSVEAW LSGEKIGEGI GKSRREALRK ASEVSIQNLA DIYLSRANGD PGSSHRDVSP
801: FANGNMNMGN ANALHKQPFA RDETAMPVPS RPTDPRLEGS MRHTGSITAL RELCASEGWE MSFQSQRPLQ SDMVHRDELH AQVEIDGRVL GEGVGSTWDE
901: ARMQAAERAL YSMRSMPPLH RRQGSPRSFG GMSNKRLKPN FQRMPSSGRY S
101: DNKTAVMSLG EEELHLVAMY SENINNDRPC FWAFTVASGI YDSCLVMLNL RCLGIVFDLD ETLVVANTTR TFDDKIEALQ RRINNEMDPQ RIAVMVAEMK
201: RYQDDKVLLK QYVESDQVVE NGEVIKVQSE IVPALSDNHQ PLVRPLIRLP EKNIILTRIN PMVRDTSVLV RMRPSWEELR SYLTAKGRKR FEVYVCTMAE
301: RDYALEMWRL LDPEGNLINA NDLLSRIVCV KAGFKKSLFN VFLDATCHPK MALVIDDRLK VWDEKDQPRV YVVPAFAPYY SPQAEAAATP VLCVTRNVAC
401: GVRGGFFRDF DDSLLQRIAQ ISYENDVEDI PSPPDVSHYL VSEDDSSGLN GNKDPLAFDG MADAEVERRM KEAISGSSVV LPAANIDPRI AAPVQYPMAS
501: ALSVPAPVPV PVVQQPSAMA FPSTQFQQPT SIAKHLVPSE PSLQSSPARE EGEVPESELD PDTRRRLLIL QHGQDTRDAT PSEPPFPQRP PVQAPPTPHV
601: QPRNGWFPVE EEMDPAPLRR TASKEYPLDS ESLNRPRHQS FYPKIENSTT QSDRMPHENR RLPKEPLRRD EQLRSNNNPP GSHPFYGEES SWNQSSSRNS
701: DIDFIPGRSV SATENPAEVL HQIAIKCGSK VDYKPGLVAS TDLRFSVEAW LSGEKIGEGI GKSRREALRK ASEVSIQNLA DIYLSRANGD PGSSHRDVSP
801: FANGNMNMGN ANALHKQPFA RDETAMPVPS RPTDPRLEGS MRHTGSITAL RELCASEGWE MSFQSQRPLQ SDMVHRDELH AQVEIDGRVL GEGVGSTWDE
901: ARMQAAERAL YSMRSMPPLH RRQGSPRSFG GMSNKRLKPN FQRMPSSGRY S
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.