CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	CDX76438	AT4G21670.1	18541146
AT3G54290.1	CDX79083	AT4G21670.1	18541146
AT3G54290.1	CDX94046	AT4G21670.1	18541146
AT3G54290.1	CDX98696	AT4G21670.1	18541146
AT3G54290.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78227	Canola	cytosol, plastid	95.87	95.34
CDX76154	Canola	plastid	74.38	82.82
CDY13198	Canola	plastid	63.91	80.28
AT3G54290.1	Thale cress	plastid	75.76	78.57
VIT_13s0101g00520.t01	Wine grape	cytosol	39.12	52.01
KRH36010	Soybean	cytosol	46.28	51.38
KRG90752	Soybean	cytosol	46.28	50.91
Solyc11g006830.1.1	Tomato	cytosol	44.9	50.0
PGSC0003DMT400061575	Potato	cytosol	44.63	49.69
KRH33267	Soybean	cytosol	41.87	44.19
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	34.44	36.55
TraesCS3A01G374300.1	Wheat	mitochondrion	20.39	29.6
Zm00001d012290_P001	Maize	cytosol	15.43	26.54
Os01t0861700-00	Rice	plasma membrane	29.48	26.35
HORVU3Hr1G084020.2	Barley	plastid	28.37	25.31
Zm00001d042764_P001	Maize	plastid	27.55	24.94
EES01796	Sorghum	mitochondrion, plastid	27.55	24.88

Protein Annotations

EnsemblPlants:CDX73491	EnsemblPlantsGene:GSBRNA2T00109006001	Gene3D:1.20.120.520	InterPro:Haemerythrin-like	PANTHER:PTHR35739	PFAM:PF01814
ProteinID:CDX73491	ProteinID:CDX73491.1	SEG:seg	UniParc:UPI0004EE5CDE	MapMan:35.2	:

Description

BnaC08g25120D

Coordinates

chrLK031799:+:702386..703785

Molecular Weight (calculated)

40573.2 Da

IEP (calculated)

6.431

GRAVY (calculated)

-0.257

Length

363 amino acids

Sequence
(BLAST)

001: MGNCFSTSSV STAEISPLDL AVKPPPAAVS SPAAAAQTHL PAPRLPIPPP SAKETTATAT ATSTVTVKLY GPSNSLATSY LRFALLHKKV NLRFVPSEDQ
101: KPTIQIGSEK TSGSQEALLR YIEEKFPEPR LMIWKFNLEG FDEATPPIVK AIWLHHRSMT WHVERMLRWS EDLAARGGRR AADPSVGTPK MEIRKFAKGY
201: TQLQELMLEH AQMEERILFP VLESVDRGMC KSASAEHGRE LPLMNGIKEY IKSIAVMDSG ICSEELFSLA SRFKSLQMMC KAHFEEEEKE LLPMVEAAEM
301: GKEKQKKLMN QGLEVMRGTH TNVFDFLLQG LTPQEAMQYL DLLINFADPD LISSFMCQRD IVD

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.