Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g078550.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54290.1 | Solyc02g078550.2.1 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061575 | Potato | cytosol | 97.55 | 97.55 |
| VIT_13s0101g00520.t01 | Wine grape | cytosol | 52.15 | 62.27 |
| KRG90752 | Soybean | cytosol | 54.6 | 53.94 |
| KRH36010 | Soybean | cytosol | 53.99 | 53.82 |
| CDY13198 | Canola | plastid | 45.71 | 51.56 |
| Bra014824.1-P | Field mustard | plastid | 50.0 | 50.0 |
| AT3G54290.1 | Thale cress | plastid | 53.37 | 49.71 |
| CDX76154 | Canola | plastid | 49.69 | 49.69 |
| KRH33267 | Soybean | cytosol | 50.61 | 47.97 |
| CDX78227 | Canola | cytosol, plastid | 50.61 | 45.21 |
| Bra007062.1-P | Field mustard | plastid | 50.31 | 45.18 |
| CDX73491 | Canola | plastid | 50.0 | 44.9 |
| GSMUA_Achr3P22630_001 | Banana | mitochondrion, plastid | 43.87 | 41.81 |
| TraesCS3A01G374300.1 | Wheat | mitochondrion | 26.38 | 34.4 |
| Os01t0861700-00 | Rice | plasma membrane | 37.42 | 30.05 |
| EES01796 | Sorghum | mitochondrion, plastid | 34.97 | 28.36 |
| Zm00001d042764_P001 | Maize | plastid | 34.66 | 28.18 |
| Zm00001d012290_P001 | Maize | cytosol | 18.1 | 27.96 |
| HORVU3Hr1G084020.2 | Barley | plastid | 34.36 | 27.52 |
Protein Annotations
| EnsemblPlants:Solyc11g006830.1.1 | EnsemblPlantsGene:Solyc11g006830.1 | Gene3D:1.20.120.520 | InterPro:Haemerythrin-like | PANTHER:PTHR35739 | PFAM:PF01814 |
| SEG:seg | UniParc:UPI000276A0D3 | UniProt:K4D4U4 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr11:+:1397978..1400112
Molecular Weight (calculated)
36886.6 Da
IEP (calculated)
7.142
GRAVY (calculated)
-0.346
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCLGVSRK SASEIAPADV LKKYPAVKLY GNPNSVTTYY IRCALLYKPV TVNFVPSDTH QSPAVEYKSD SVTGSVDSVL RYLDMKFPEP KLLTGSIGGW
101: YDETTPFVVW LVILQHRSIM WHLERMGRWA EDLAARGGKA RGDPAMGTPR MEVRKFARGY SQLLELMLEH AQMEERVVFQ ILEKADRGLS KAANEEHARD
201: LPMMNGIKED IKSIGVLDSG HPAYQDALCN LSTRLKTLKE HSKKHFEEEE KNLLPLMEAA ELSKAQQDKV LDQCLDVMHG THSHLFRFFM EGLLPPDAMH
301: YLDMLSRCSD QNRVSTMLRL ITDKAV
101: YDETTPFVVW LVILQHRSIM WHLERMGRWA EDLAARGGKA RGDPAMGTPR MEVRKFARGY SQLLELMLEH AQMEERVVFQ ILEKADRGLS KAANEEHARD
201: LPMMNGIKED IKSIGVLDSG HPAYQDALCN LSTRLKTLKE HSKKHFEEEE KNLLPLMEAA ELSKAQQDKV LDQCLDVMHG THSHLFRFFM EGLLPPDAMH
301: YLDMLSRCSD QNRVSTMLRL ITDKAV
001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD
Arabidopsis Description
At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.