Factsheet for Bra007062.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013546.1-P
Bra020905.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	Bra013546.1-P	AT4G21670.1	18541146
AT3G54290.1	Bra020905.1-P	AT4G21670.1	18541146
AT3G54290.1	Bra038764.1-P	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78227	Canola	cytosol, plastid	97.25	96.71
Bra014824.1-P	Field mustard	plastid	74.38	82.82
AT3G54290.1	Thale cress	plastid	75.21	78.0
VIT_13s0101g00520.t01	Wine grape	cytosol	38.29	50.92
KRH36010	Soybean	cytosol	45.73	50.76
Solyc11g006830.1.1	Tomato	cytosol	45.18	50.31
KRG90752	Soybean	cytosol	45.73	50.3
PGSC0003DMT400061575	Potato	cytosol	44.9	50.0
KRH33267	Soybean	cytosol	42.98	45.35
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	35.54	37.72
TraesCS3A01G374300.1	Wheat	mitochondrion	20.66	30.0
Zm00001d012290_P001	Maize	cytosol	15.98	27.49
Os01t0861700-00	Rice	plasma membrane	30.58	27.34
Zm00001d042764_P001	Maize	plastid	28.93	26.18
EES01796	Sorghum	mitochondrion, plastid	28.93	26.12
HORVU3Hr1G084020.2	Barley	plastid	29.2	26.04

Protein Annotations

EnsemblPlants:Bra007062.1	EnsemblPlants:Bra007062.1-P	EnsemblPlantsGene:Bra007062	Gene3D:1.20.120.520	InterPro:Haemerythrin-like	PANTHER:PTHR35739
PFAM:PF01814	SEG:seg	UniParc:UPI00025428AF	UniProt:M4CS70	MapMan:35.2	:

Description

AT3G54290 (E=7e-144) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

Coordinates

chrA09:-:27111593..27112821

Molecular Weight (calculated)

40778.6 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.245

Length

363 amino acids

Sequence
(BLAST)

001: MGNCFSTSSV AEISPLDLAV KPPLAVVASP AAAAQTHLPA PPTRLPIPPP SAKETTATAT ATSTVTVKLY GPPNSLVTSY LRFALLHKRV NLRFVPSEDQ
101: KPTIQIGSEK TSGTQDALLR YIEEKFPEPR LMLWKFNLEG FDEATPPVVK TIWLQHRSMT WHVERMLRWS EDLAARGGRR AVDPSVGTPK MEIRKFAKSY
201: TQLQEMMLEH AQMEERILFP VLESVDRGMC KSASAEHGRE LPLMNGIKEY IKSIAVMDSG ICSEELFSLA SRFKSLQMMC KAHFEEEEKE LLPMVEAAEM
301: GKEKQKKLMN QGLEVMRGTH TNVFDFLLQG LTPQEAMQYL DLLMNFADPD LISSFMCQRD IVD

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.