CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH50009

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	KRH10835	AT4G21670.1	18541146
AT3G54290.1	KRH20483	AT4G21670.1	18541146
AT3G54290.1	KRH21480	AT4G21670.1	18541146
AT3G54290.1	KRH50009	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90752	Soybean	cytosol	63.37	66.06
KRH36010	Soybean	cytosol	60.47	63.61
VIT_13s0101g00520.t01	Wine grape	cytosol	44.77	56.41
PGSC0003DMT400061575	Potato	cytosol	48.26	50.92
Solyc11g006830.1.1	Tomato	cytosol	47.97	50.61
CDY13198	Canola	plastid	39.24	46.71
Bra014824.1-P	Field mustard	plastid	43.02	45.4
CDX76154	Canola	plastid	43.02	45.4
AT3G54290.1	Thale cress	plastid	45.64	44.86
CDX78227	Canola	cytosol, plastid	45.64	43.01
Bra007062.1-P	Field mustard	plastid	45.35	42.98
CDX73491	Canola	plastid	44.19	41.87
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	36.63	36.84
TraesCS3A01G374300.1	Wheat	mitochondrion	24.13	33.2
Os01t0861700-00	Rice	plasma membrane	33.72	28.57
Zm00001d012290_P001	Maize	cytosol	17.15	27.96
HORVU3Hr1G084020.2	Barley	plastid	31.98	27.03
Zm00001d042764_P001	Maize	plastid	31.4	26.93
EES01796	Sorghum	mitochondrion, plastid	31.4	26.87

Protein Annotations

EMBL:ACUP02006436	EnsemblPlants:KRH33267	EnsemblPlantsGene:GLYMA_10G111100	EntrezGene:100816759	Gene3D:1.20.120.520	InterPro:Haemerythrin-like
PANTHER:PTHR35739	PFAM:PF01814	ProteinID:KRH33267	ProteinID:KRH33267.1	SEG:seg	UniParc:UPI000233C220
UniProt:I1LA07	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:26040783..26043704

Molecular Weight (calculated)

38185.1 Da

IEP (calculated)

5.776

GRAVY (calculated)

-0.226

Length

344 amino acids

Sequence
(BLAST)

001: MGNCLRTSEK LTAEIVPHGG ATVYPAVRLH GSPNSIFAAY TRFAVLHNAV PPDPVLAAAP PPQAPTAFCG GRSEAAVPVV FHVGHDVASG SRDALLRFID
101: LKFPDLAEEE TAPPPPAESG GGKEETSLVV RVTRLQHKSM TWHLERMVGW AEDLATRGGT RAVDPKVGTW KMEVVKFGRS YSQLLEVMLE HAQMEERVLF
201: PIFDSADRGL SKAAKEEHAR DLPIMNGIKE IIKSVEVLDS RSLNYKETLY NLSNRLKSLQ GLCKQHFMEE DSELLPIMEA VGLSKEEEED ALEHCFVVMQ
301: GTHGRLLKFL LEGLPPNDSM KYLDLISMCR DKERMESMLR VVVE

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.