Factsheet for PGSC0003DMT400061575

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400057635

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	PGSC0003DMT400057635	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006830.1.1	Tomato	cytosol	97.55	97.55
VIT_13s0101g00520.t01	Wine grape	cytosol	52.45	62.64
KRG90752	Soybean	cytosol	54.91	54.24
KRH36010	Soybean	cytosol	54.29	54.13
CDY13198	Canola	plastid	45.71	51.56
Bra014824.1-P	Field mustard	plastid	49.69	49.69
AT3G54290.1	Thale cress	plastid	53.07	49.43
CDX76154	Canola	plastid	49.39	49.39
KRH33267	Soybean	cytosol	50.92	48.26
CDX78227	Canola	cytosol, plastid	50.31	44.93
Bra007062.1-P	Field mustard	plastid	50.0	44.9
CDX73491	Canola	plastid	49.69	44.63
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	43.25	41.23
TraesCS3A01G374300.1	Wheat	mitochondrion	26.38	34.4
Os01t0861700-00	Rice	plasma membrane	37.42	30.05
EES01796	Sorghum	mitochondrion, plastid	35.28	28.61
Zm00001d042764_P001	Maize	plastid	34.97	28.43
Zm00001d012290_P001	Maize	cytosol	18.1	27.96
HORVU3Hr1G084020.2	Barley	plastid	34.36	27.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400061575	EnsemblPlantsGene:PGSC0003DMG400023969	EntrezGene:102581923	Gene3D:1.20.120.520	InterPro:Haemerythrin-like	PANTHER:PTHR35739
PFAM:PF01814	PGSC:PGSC0003DMG400023969	RefSeq:XP_006361484.1	SEG:seg	UniParc:UPI000296ED50	UniProt:M1C7Q4
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023969]

Coordinates

chr11:-:5463879..5467150

Molecular Weight (calculated)

36960.8 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.343

Length

326 amino acids

Sequence
(BLAST)

001: MGNCLGVSRK SASEIAPADV LKKYPAVKLY GNPNSVTTYY IRCALLYKPV TVNFVPSDTH QSPAVEYKSD SVTGSVDSVL RYLDLKFPEP KLLMGSIGGW
101: YDETTPYVVW LVILQHRSMM WHLERMGRWA EDLAARGGKA RGDPAMGTPR MEVRKFARGY SQLLELMLEH AQMEEKVVFQ ILEKADRGLS KAANEEHARD
201: LPMMNGIKED IKSIGVLDSG HPAYQDALCN LSTRLKTLKE HSKKHFEEEE KNLLPLMEAT ELSKAQQDKV LDQCLDVMHG THSHLFRFFM EGLLPPDAMH
301: YLDMLSRCSD QNRVSTMLRL IIEKAV

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.