Factsheet for PGSC0003DMT400057635

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001171
PGSC0003DMT400002331
PGSC0003DMT400024215
PGSC0003DMT400025563
PGSC0003DMT400039670
PGSC0003DMT400061575
PGSC0003DMT400067082
PGSC0003DMT400077953

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	PGSC0003DMT400024215	AT1G09700.1	23141542
AT4G21670.1	PGSC0003DMT400025563	AT1G20110.1	18541146
AT4G21670.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT4G21670.1	PGSC0003DMT400067082	AT1G35670.1	19130088
AT4G21670.1	PGSC0003DMT400039670	AT1G52890.1	18541146
AT4G21670.1	PGSC0003DMT400001171	AT2G28840.1	18541146
AT4G21670.1	PGSC0003DMT400077953	AT2G28840.1	18541146
AT4G21670.1	PGSC0003DMT400061575	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078550.2.1	Tomato	nucleus	96.48	89.1
Zm00001d029743_P001	Maize	cytosol	10.78	82.61
GSMUA_Achr11P...	Banana	cytosol	3.18	71.79
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	56.64	63.32
KRH50009	Soybean	nucleus	64.13	59.1
KRH20483	Soybean	nucleus	64.02	58.75
KRH10835	Soybean	nucleus	63.79	58.66
KRH21480	Soybean	nucleus	63.11	57.92
GSMUA_Achr8P14120_001	Banana	nucleus	58.34	54.16
GSMUA_Achr11P...	Banana	nucleus	56.75	53.94
Bra020905.1-P	Field mustard	cytosol	51.53	53.6
CDY31421	Canola	cytosol	50.96	53.58
CDX76438	Canola	cytosol	51.08	53.13
EES05486	Sorghum	cytosol	56.3	53.1
GSMUA_Achr11P...	Banana	extracellular	11.01	53.01
CDX94046	Canola	nucleus	57.21	53.0
Os02t0639000-01	Rice	cytosol	56.41	52.87
Bra038764.1-P	Field mustard	nucleus	56.75	52.8
CDX98696	Canola	nucleus	55.51	52.47
HORVU6Hr1G060230.12	Barley	nucleus	55.28	52.25
AT4G21670.1	Thale cress	nucleus	57.32	52.22
Os04t0529500-02	Rice	extracellular	54.94	51.88
TraesCS6A01G235300.4	Wheat	nucleus	54.94	51.43
TraesCS6D01G218000.3	Wheat	nucleus	54.94	51.38
HORVU2Hr1G091030.9	Barley	endoplasmic reticulum, vacuole	51.87	51.29
TraesCS6B01G264000.3	Wheat	nucleus	54.82	51.27
TraesCS2A01G373400.3	Wheat	nucleus	55.05	51.16
KXG26770	Sorghum	nucleus	54.48	50.96
Zm00001d017373_P001	Maize	nucleus	55.51	50.83
Zm00001d051242_P002	Maize	cytosol, nucleus, plastid	53.12	49.95
TraesCS2B01G390500.3	Wheat	nucleus	53.01	49.21
CDX79083	Canola	nucleus	47.9	49.13
TraesCS2D01G369600.4	Wheat	nucleus	52.78	49.05
Bra013546.1-P	Field mustard	nucleus	47.33	47.49
VIT_00s0370g00030.t01	Wine grape	nucleus, plastid	5.11	28.12

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	InterPro:FCP1_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004647	GO:GO:0004721	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0006470
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008420
GO:GO:0009058	GO:GO:0009611	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009738
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	GO:GO:0045892
GO:GO:0070940	InterPro:HAD-like_sf	InterPro:IPR004274	InterPro:IPR014720	UniProt:M1C1E8	PFAM:PF03031
EnsemblPlantsGene:PGSC0003DMG400022380	PGSC:PGSC0003DMG400022380	EnsemblPlants:PGSC0003DMT400057635	PFscan:PS50137	PFscan:PS50969	PANTHER:PTHR23081
PANTHER:PTHR23081:SF17	SMART:SM00358	SMART:SM00577	SUPFAM:SSF54768	SUPFAM:SSF56784	UniParc:UPI000295D3AE
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

Double-stranded RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022380]

Coordinates

chr2:-:34220314..34228504

Molecular Weight (calculated)

98920.2 Da

IEP (calculated)

5.925

GRAVY (calculated)

-0.400

Length

881 amino acids

Sequence
(BLAST)

001: MFKSTVVLYE GERLVGEVEI YCEKGVLWGE KVIRISHYSP SSERCPPLAV LHTVTTGLSF KLEPTKSKPL TQDSPLTLLH STCLRDNKTA VMSLGREELH
101: LVAMQSKNIG GQCPCFWGFK VASGLYDSCL TMLNLRCLGI VFDLDETLIV ANTMRSFEDR IEALQRKINS ESDPQRASVM LAEVKRYQED KIILKQYAEN
201: DQVVDNGKVI KSQSEVFPAL SDNHQPIVRP LIRLQDRNII LTRINPMIRD TSVLVRLRPA WEDLRSYLTA RGRKRFEVYV CTMAERDYAL EMWRLLDPDS
301: NLINSQELLD RIVCVKSGLR KSLFNVFQDG NCHPKMALVI DDRLKVWDDK DQPRVHVVPA FAPYFAPQAE GNNSVPVLCV ARNVACNVRG GFFKDFDEGL
401: LQRISEVAYE DDIKQVPSAP DVSNYLISED DPSAVNGNKD SLGFDGMADS EVERRLKEAM LASTSVPSQM TNLDPRLVPA LQYPVPPVIS QPSIQSPVVP
501: FPTQHLPQVT SVLKSSVTQI SPQDTSLQSS PAREEGEVPE SELDPDTRRR LLILQHGQDT RDQVSSEPKF PMGTPLQVSV PPRVQPHGWF PAEEEMSPRQ
601: LNRPLPPKEF PLNPESMHIN KHRPPHPPFL PKMETSMPSD RVLFENQRLP KEVIPRDDRM RFSQSQPSFR PPGEEVPLGR SSSSNRVLDL EPGHYDPYLE
701: TPAGALQDIA FKCGAKVEFR SSFLSSPELQ FSLEVLFAGE KVGEGTGRTR REAQRRAAEE SLMYLADKYL SCIKPDSSST QGDGFRFPNA SDNGFVDNMS
801: PFGYQDRVSH SFASEPPRVL DPRLEVFKKS VGSVGALREL CAIEGLGLAF QTQPQLSANP GQKSEIYAQV AHLLPFLLCY C

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.