Factsheet for GSMUA_Achr11P01910_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P26420_001
GSMUA_Achr1P27590_001
GSMUA_Achr1P27620_001
GSMUA_Achr1P27690_001
GSMUA_Achr2P08110_001
GSMUA_Achr3P22630_001
GSMUA_Achr5P22670_001
GSMUA_Achr5P22680_001
GSMUA_Achr6P01800_001
GSMUA_Achr6P20560_001
GSMUA_Achr6P25560_001
GSMUA_Achr6P33430_001
GSMUA_Achr7P18180_001
GSMUA_Achr7P19610_001
GSMUA_Achr8P16450_001
GSMUA_Achr8P33940_001
GSMUA_Achr9P08680_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	GSMUA_Achr11P...	AT1G09700.1	23141542
AT4G21670.1	GSMUA_Achr8P16450_001	AT1G09700.1	23141542
AT4G21670.1	GSMUA_Achr1P26420_001	AT1G20110.1	18541146
AT4G21670.1	GSMUA_Achr1P27590_001	AT1G20110.1	18541146
AT4G21670.1	GSMUA_Achr1P27620_001	AT1G20110.1	18541146
AT4G21670.1	GSMUA_Achr1P27690_001	AT1G20110.1	18541146
AT4G21670.1	GSMUA_Achr8P33940_001	AT1G20110.1	18541146
AT4G21670.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT4G21670.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT4G21670.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT4G21670.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT4G21670.1	GSMUA_Achr10P...	AT2G27100.1	23141542
AT4G21670.1	GSMUA_Achr5P22670_001	AT2G27100.1	23141542
AT4G21670.1	GSMUA_Achr5P22680_001	AT2G27100.1	23141542
AT4G21670.1	GSMUA_Achr6P01800_001	AT2G27100.1	23141542
AT4G21670.1	GSMUA_Achr7P19610_001	AT2G27100.1	23141542
AT4G21670.1	GSMUA_Achr10P...	AT2G28840.1	18541146
AT4G21670.1	GSMUA_Achr6P33430_001	AT2G28840.1	18541146
AT4G21670.1	GSMUA_Achr7P18180_001	AT2G28840.1	18541146
AT4G21670.1	GSMUA_AchrUn_...	AT2G28840.1	18541146
AT4G21670.1	GSMUA_Achr6P20560_001	AT3G26730.1	18541146
AT4G21670.1	GSMUA_Achr10P...	AT3G49250.1	18541146
AT4G21670.1	GSMUA_Achr3P22630_001	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029743_P001	Maize	cytosol	10.57	85.22
GSMUA_Achr8P14120_001	Banana	nucleus	82.31	80.4
GSMUA_Achr11P...	Banana	cytosol	3.24	76.92
GSMUA_Achr11P...	Banana	extracellular	11.97	60.66
Os02t0639000-01	Rice	cytosol	61.06	60.21
HORVU6Hr1G060230.12	Barley	nucleus	60.3	59.98
TraesCS6A01G235300.4	Wheat	nucleus	60.09	59.19
TraesCS6D01G218000.3	Wheat	nucleus	59.87	58.92
EES05486	Sorghum	cytosol	59.22	58.78
TraesCS6B01G264000.3	Wheat	nucleus	59.55	58.6
KXG26770	Sorghum	nucleus	58.79	57.86
Os04t0529500-02	Rice	extracellular	57.39	57.02
Zm00001d017373_P001	Maize	nucleus	59.01	56.86
PGSC0003DMT400057635	Potato	nucleus	53.94	56.75
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	48.0	56.47
Zm00001d051242_P002	Maize	cytosol, nucleus, plastid	56.74	56.14
TraesCS2A01G373400.3	Wheat	nucleus	57.39	56.12
KRH50009	Soybean	nucleus	57.82	56.07
HORVU2Hr1G091030.9	Barley	endoplasmic reticulum, vacuole	53.72	55.89
KRH20483	Soybean	nucleus	57.07	55.1
Solyc02g078550.2.1	Tomato	nucleus	56.31	54.72
TraesCS2D01G369600.4	Wheat	nucleus	55.66	54.43
TraesCS2B01G390500.3	Wheat	nucleus	55.45	54.16
KRH10835	Soybean	nucleus	55.66	53.86
KRH21480	Soybean	nucleus	55.12	53.23
AT4G21670.1	Thale cress	nucleus	52.32	50.16
Bra038764.1-P	Field mustard	nucleus	51.02	49.95
Bra020905.1-P	Field mustard	cytosol	45.42	49.7
CDX98696	Canola	nucleus	49.84	49.57
CDX94046	Canola	nucleus	50.81	49.53
CDY31421	Canola	cytosol	44.77	49.52
CDX76438	Canola	cytosol	44.98	49.23
GSMUA_Achr10P...	Banana	cytosol	31.72	48.84
CDX79083	Canola	nucleus	44.23	47.73
Bra013546.1-P	Field mustard	nucleus	43.26	45.67
VIT_00s0370g00030.t01	Wine grape	nucleus, plastid	7.23	41.88

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	InterPro:FCP1_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008420	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0070940	EnsemblPlantsGene:GSMUA_Achr11G01910_001	EnsemblPlants:GSMUA_Achr11P01910_001	EnsemblPlants:GSMUA_Achr11T01910_001	InterPro:HAD-like_sf	InterPro:IPR004274
InterPro:IPR014720	UniProt:M0RNM1	PFAM:PF00035	PFAM:PF03031	PFscan:PS50137	PFscan:PS50969
PANTHER:PTHR23081	PANTHER:PTHR23081:SF17	SMART:SM00358	SMART:SM00577	SUPFAM:SSF54768	SUPFAM:SSF56784
UniParc:UPI00029511F7	InterPro:dsRBD_dom	:	:	:	:

Description

RNA polymerase II C-terminal domain phosphatase-like 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G01910_001]

Coordinates

chr11:-:1303505..1321786

Molecular Weight (calculated)

103833.0 Da

IEP (calculated)

7.123

GRAVY (calculated)

-0.473

Length

927 amino acids

Sequence
(BLAST)

001: MFKSAVYYEN SFCGEVQIYP QNPNIGSRIR EIRISHLSPS SERCQPLALL HTVASGGVCI KVESTSTSTD DSPLFRLHTT LARENKTAVV QQGKEELHLV
101: AMTSRKNPMP YSCFWGFSVP SQLYESSLLM LNLRCLGIVF DLDETLLVAN TMRSFEDRID ALQRKINNET DPQRIAGMLM EIKRYQDDKS ILKQYAENDQ
201: VNENGRLFKV QSEMVPPLSD SHQLIARPVI RLQEKNIILT RVNPSIRDTS VLVRLRPSWE DLRSYLTARG RKRFEVYVCT MAERDYALEM WRLLDPDSSL
301: INSSKLLDRI VCVKSGSRKS LLNVFQDGIC HPKMALVIDD RLKVWDEKDQ SRVHVVPAFA PYYAPQAEAN STIPVLCVAR NVACNVRGGF FKAFDEGILP
401: RISEILYEDE MKDIPPAPDV GNFLISEDDT STSNVNKDQS CHNGMADAEV ERRLKEASCS VQAVHPMVTN FVQRPVSSQH VASSFGTSLT AMQMMVPLPN
501: DQGSQSVAVG RPLGQLAFPE PSFQGSPSRE EGEVPESELD PDTRRRLLIL QHGQDTREPP TSFPMNPPLH VSIPSVQPQG SWFPSEEEIK PRQENTASKE
601: FIRELDHARY KKQFRHPSFM HGGENSVPYD RVHEPRRSPL NNGGDCVWQN NSLSNFNSFK GDKVPMGRNF SSYKDAQFET RQATIKQAES PAGILQEIAM
701: RCRNKVEFRS TLCDTAELQF SIEVWFVGEK LGEGVGKTRK EAQHRAAEIS VRNLADKYLS NALTGPNTVH GDLPKLPQAK ENGLLSELNS YGYQPCSRND
801: LLLVASTSEN SHSMDQRLEG SRRTSSITSL KELCVMEGFD LVFRAEPSTS NGSVSKGEVS AQVEIARQIL GRGVGTTWVE AKLQAAEQAL GTLRSMLGQF
901: TQKRSSLPGS MSITANKRSK PIFTDAA

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.