Factsheet for GSMUA_Achr1P27690_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr8P14120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr8P14120_001	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	41.29	93.26
GSMUA_Achr1P27620_001	Banana	cytosol	53.23	80.45
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	59.2	76.77
GSMUA_Achr1P27610_001	Banana	cytosol	26.87	76.06
KRH45071	Soybean	cytosol, nucleus, plastid	19.9	52.63
KRH05975	Soybean	cytosol	64.18	39.45
CDY44204	Canola	cytosol	63.68	32.82
GSMUA_Achr8P33940_001	Banana	cytosol	75.62	29.17
Bra025793.1-P	Field mustard	cytosol	28.86	28.86
CDY29372	Canola	cytosol	28.86	28.71
KRH61022	Soybean	nucleus	71.14	27.24
KRH51684	Soybean	cytosol	70.15	25.73
Bra016476.1-P	Field mustard	cytosol	69.15	25.14
CDY62935	Canola	cytosol	69.15	25.14
OQU77119	Sorghum	cytosol	61.69	24.65
Os06t0724100-01	Rice	cytosol	59.7	24.59
CDY54337	Canola	cytosol	67.66	24.42
TraesCS7D01G528300.1	Wheat	cytosol	59.7	23.58
TraesCS2D01G203300.1	Wheat	cytosol	58.71	23.51
HORVU2Hr1G037770.2	Barley	cytosol	58.71	23.51
TraesCS2B01G223000.1	Wheat	cytosol	58.71	23.51
VIT_18s0001g14750.t01	Wine grape	cytosol	68.16	23.42
TraesCS2A01G184400.2	Wheat	cytosol	58.21	23.31
Os07t0573300-01	Rice	cytosol	58.71	22.82
EER97421	Sorghum	cytosol	60.2	22.66
AT1G20110.1	Thale cress	cytosol	67.66	22.63
Solyc04g081750.2.1	Tomato	cytosol	61.69	22.02
PGSC0003DMT400025563	Potato	cytosol	61.69	22.02
Zm00001d021878_P003	Maize	cytosol	58.71	21.77
CDY37424	Canola	extracellular	30.35	21.48
GSMUA_Achr7P20360_001	Banana	extracellular	8.96	17.31
GSMUA_Achr1P26420_001	Banana	cytosol	42.79	17.0
CDY43412	Canola	nucleus	37.81	13.87
Zm00001d014808_P001	Maize	extracellular	19.9	10.58
KRH17455	Soybean	extracellular	2.49	3.11
GSMUA_Achr5P22350_001	Banana	cytosol	15.42	2.89
GSMUA_Achr7P20370_001	Banana	nucleus	13.43	2.58

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr1G27690_001	EnsemblPlants:GSMUA_Achr1P27690_001	EnsemblPlants:GSMUA_Achr1T27690_001	InterPro:IPR013083	InterPro:IPR017455	UniProt:M0S3M6
PFAM:PF01363	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064	SUPFAM:SSF57903
UniParc:UPI0002955E14	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G27690_001]

Coordinates

chr1:-:25244037..25252193

Molecular Weight (calculated)

22489.5 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.664

Length

201 amino acids

Sequence
(BLAST)

001: MSSSRRNSRK ISSSWQTINP YFVSDQSAER KKSLVDWMNL IKPANGEKDH WVPDEAVSKC TSCGSDFGAF NRRHHCRNCG DIFCDKCTKG RIALTAKENA
101: QQVRVCDRCM AEVSQRLSNA KEAVSKPAGL QSHEDLARRL QEELNKNRKS GSNSDESWKP TREVACPICT VHLQFLVQVP ASSSQTIKCG VCQHPFLVSA
201: D

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.