CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	CDX76438	AT4G21670.1	18541146
AT1G20110.1	CDX79083	AT4G21670.1	18541146
AT1G20110.1	CDX94046	AT4G21670.1	18541146
AT1G20110.1	CDX98696	AT4G21670.1	18541146
AT1G20110.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29372	Canola	cytosol	31.78	87.62
CDY62935	Canola	cytosol	81.69	82.28
GSMUA_Achr1P27620_001	Banana	cytosol	17.24	72.18
CDY44204	Canola	cytosol	50.45	72.05
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	19.21	69.03
GSMUA_Achr1P27690_001	Banana	mitochondrion	24.42	67.66
AT1G20110.1	Thale cress	cytosol	70.2	65.06
Os06t0724100-01	Rice	cytosol	49.01	55.94
GSMUA_Achr8P33940_001	Banana	cytosol	51.35	54.89
TraesCS2B01G223000.1	Wheat	cytosol	48.83	54.18
Os07t0573300-01	Rice	cytosol	50.09	53.97
TraesCS2D01G203300.1	Wheat	cytosol	47.76	52.99
HORVU2Hr1G037770.2	Barley	cytosol	47.76	52.99
TraesCS2A01G184400.2	Wheat	cytosol	47.58	52.79
KRH17455	Soybean	extracellular	15.08	52.17
EER97421	Sorghum	cytosol	49.01	51.12
OQU77119	Sorghum	cytosol	45.96	50.89
Zm00001d021878_P003	Maize	cytosol	48.65	50.0
TraesCS7D01G528300.1	Wheat	cytosol	44.88	49.12
Zm00001d014808_P001	Maize	extracellular	31.6	46.56
GSMUA_Achr1P26420_001	Banana	cytosol	40.93	45.06
CDY43412	Canola	nucleus	43.81	44.53
CDY37424	Canola	extracellular	19.03	37.32
CDY25311	Canola	cytosol, plastid	10.05	5.42
CDY52319	Canola	plastid	9.34	5.16

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	GO:A0A078IWG9	UniProt:A0A078IWG9	EnsemblPlants:CDY54337	ProteinID:CDY54337
ProteinID:CDY54337.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00013900001
InterPro:IPR013083	InterPro:IPR017455	PFAM:PF01363	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI0004EDC823	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaCnng26830DBnaCnng26830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWG9]

Coordinates

chrLK033305:-:42089..45378

Molecular Weight (calculated)

60351.6 Da

IEP (calculated)

7.075

GRAVY (calculated)

-0.785

Length

557 amino acids

Sequence
(BLAST)

001: MQPGDYNSYY HHHQYPPQFP NPNPNPTDLS QNTYASAPPF SGGYGAGDYS QNYQPGKNTE HVPPPSAPPS FTPPPATNPN SYSALNQPPP IHPPAPSSYG
101: SSAPPYTSQQ PMYYPPYDPP PSSAAASPNP NPLVHTPQQP YSSSYSSTPY TGGGGGSSYE KPPVKFDQPS YGDYGRSESA SDLYGKQRSG SGGGYPAFED
201: SSYGDGVYPY SGGGKVEPYG SRGTAPKSSN STLFDDYGRP ISVSDSSSSA KIARAVPKAD VQEDASGGVQ KFRVKLLAET YGQTTTDVLC QIGLDGLRML
301: DPSSSRTLRI YPLENITRCE KLDSSILAFW SKTPVDFEAK RIRLQSNSYT TNTLLDTVTA AMFQAKEIGG SSRPPVSAKL VEQSAEKKKG LGDWMNKIKP
401: VNEEKDHWVP DEAVSKCTSC GSDFGAFLRR HHCRNCGDVF CDKCSQGRIA LTAEENAPEV RVCDRCMAEV SQRLSNAKES ASRNMSLQSH EDLARKLQEE
501: MQRNRKSSSG LREGSGRRMK EVACPTCTVH LQVQVPSSGS ETIECGVCQN PFLVSSH

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.